Bradyrhizobium japonicum E109: RN69_40580
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Entry
RN69_40580 CDS
T03509
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN69_40580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjp03019
]
RN69_40580
Enzymes [BR:
bjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RN69_40580
Messenger RNA biogenesis [BR:
bjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RN69_40580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF8086
SUa-2TM
HEM4
Coprogen_oxidas
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AJA65850
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All DBs
Position
8688754..8690340
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AA seq
528 aa
AA seq
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MERTHLLTSFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTA
SFALPILHRLLENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVP
MGRQVRALMPGLDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTAERINQRIIQVDFSAKPA
FLTKLLKDEPVNRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSG
EIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTARAGADGTAISLVAGGEE
LSYLRDIERLIKVALPREDLRTDAGRRDAGPPPPQQRQGRPGRPGQRPHGARHGEGRHTD
GRRTDERHADGRHHSAAKQGDGRPGEGRHGDGRHVEGRHAEGRPGNGPKASKGSRRRRSG
GKMHSSPTDRSEQRPAHSAGKPDGIQGVAFLRRESRPNGQPTRKPFSH
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccatcttttgacttcctttcaggacttcggccttgccgaacccatcgcg
cgtgctctcgccgaagagaattacgtcactcccacccccatccaggcccagacgattccc
acggcgctgaccggccgcgacgtcgtcggcatcgcccagaccggcaccggcaagaccgcg
tccttcgcgctgccgatcctgcaccgcctgctggagaaccgcatcaagccgcagccgaag
acctgccgggtgctggtgctctcgcccacccgcgagctgtccggccagatcctcgatagc
ttcaacgcctacggccgccacatccgcctgtcctcgacactggccatcggcggcgtgccg
atgggccgccaggttcgcgcgctgatgcctggcctcgatgtcttggtggcgacccccggg
cggctgctggacctcgtgcagagcaacgggctgaagcttggaagcgtcgaattcctcgtg
ctcgacgaggccgaccgcatgctcgacatgggcttcatcaacgacatccgcaaaatcgtc
gccaagctgccgatcaagcggcagacgctgttcttctcggccaccatgccgaaggacatc
gccgagctcgccgacgcgatgctgcgggaccccgcccgcgttgcggtcaccccggtgtcc
tcgaccgccgagcggatcaaccagcgcatcatccaggtcgatttctccgccaagcccgcc
ttcctgaccaagctcctgaaggacgagccggtcaatcgcgcgctggtcttcacccgcacc
aagcatggtgccgacaaggtcgtgaagacactcgagaaggctggcatcgccgccagcgcc
atccatggcaacaagtcacagaaccatcgcgagcggacgctcgcccagttccgttccggc
gagatccgcaccctggtcgccaccgacatcgccgcccgcggtatcgatgtcgacggcatc
agccacgtcatcaatttcgacctgccgaacgtacccgagacctatgtgcaccgtatcggt
cgcaccgcgcgcgccggtgccgacggtaccgcgatctcgctggtcgccggcggcgaggaa
ctcagctatctccgcgacatcgagcgactgatcaaggtggcgctgccgcgcgaggatctc
cgcaccgatgcggggcgccgcgatgcgggtccgcccccgccgcagcaacgacagggccgg
ccgggccgcccgggccagcgtccgcacggcgcaaggcatggtgagggacgtcacactgac
ggacgacgcaccgacgaaaggcatgccgacggacgccaccatagcgccgccaagcagggc
gatggacggcccggtgaaggccggcacggcgacggacggcatgttgagggaaggcatgct
gaaggaaggcccggcaacggcccgaaggcctcgaaagggtctcgtcgccgccgctccggt
ggcaagatgcattcttccccaaccgaccggtcggaacagcgtcctgcgcatagcgccggc
aagcccgatgggatacaaggcgtggcctttttacgccgcgagagtcggccgaacggccaa
ccgacccgcaaacccttttcgcactag
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