Bacillus sp. JS: MY9_3409
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Entry
MY9_3409 CDS
T02027
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bjs
Bacillus sp. JS
Pathway
bjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY9_3409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjs03019
]
MY9_3409
03016 Transfer RNA biogenesis [BR:
bjs03016
]
MY9_3409
Enzymes [BR:
bjs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MY9_3409
Messenger RNA biogenesis [BR:
bjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MY9_3409
Transfer RNA biogenesis [BR:
bjs03016
]
Prokaryotic type
tRNA degradation factors
MY9_3409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
TFIIE_beta
CsrA
Motif
Other DBs
NCBI-ProteinID:
AFI29941
LinkDB
All DBs
Position
complement(3329942..3332281)
Genome browser
AA seq
779 aa
AA seq
DB search
MEKEAFMEKLLSFMKEEAYKPLTVQELEEMLKITEAEEFKELVKALVALEEKGLIVRTRS
DRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKV
VVKLTSYPEGRMNAEGEIETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTI
DEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQ
SVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDF
KEAKVLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHT
SSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGSPRRPREL
DSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcatttatggaaaagcttctctcgtttatgaaggaagaggcatacaag
cctttgactgttcaggaactagaggagatgttaaaaattacggaagccgaggagtttaaa
gagctcgtcaaagcgttagtcgccttggaagaaaaagggcttatcgtacggacgagaagc
gaccgctacggcattccggagaagatgaatttaataaaaggaaagatttcagcgcatgcg
aaaggattcgcctttttgctgcctgaggatacgtcgttaagcgatgtgtttattccgcct
aatgagctgaatacggcaatgaacggcgatatcgtcatggttcgcctgaattcacagtca
agcggctccaggcaggaaggaaccgttatacggattttagaaagagcgattcagcgggtt
gtcggcacgtatacagaaacgagaaacttcggctttgtcattccggacgacaaaaaaatc
acgagtgacatcttcattccgaaaaacgggaaaaatggagctgcggaagggcataaggtt
gttgtcaagctgacgagctatcctgaaggccgcatgaacgctgagggcgagattgaaacc
attctcggccacaaaaatgatccgggcattgatattttatcggtcattcataagcacggc
ctgccgggagaatttccagccgacgcgatggagcaggcatcaagtacgcctgacacaatt
gatgaaaaagatctgaaagaccgccgtgatctccgtgaccaggtgattgtcaccattgat
ggggcggacgcgaaggatttggatgatgcagttaccgtgacgaagctggacgatggaagc
tacaagcttggcgttcatattgctgatgtcagccattacgtaaccgaaaactcaccgatt
gacaaagaagcgcttgaaagagggacgagtgtgtatttggttgaccgtgtcatcccgatg
attccgcacagattgtcaaacggcatctgctccttaaatccaaaggttgaccgcctgacg
ctttcttgtgaaatgaccattaacagtcagggacaggtgacagagcacgagatcttccaa
agtgtcatcaaaacaacggaaagaatgacatattcagatgtgaataaaattcttgttgac
gatgatgaagagctgaaacaaaaatacgagcctcttgttccgatgttcaaagatatggag
cgcctggctcaaattcttcgcgataagcggatggaccgcggcgccgttgactttgatttc
aaagaagcaaaggtgcttgtcgatgacgaaggagcggttaaagacgttgtgatcagagaa
cgctctgtcgccgagaagctcattgaagaatttatgcttgtggcaaatgaaacagtagcg
gagcatttccattggatgaacgtcccgtttatataccggattcacgaagagccgaatgct
gaaaagctgcaaaagtttttagagtttgtgacgacatttggctatgtggtgaaaggaacg
gcgggaaatattcacccgcgcgccctgcaaagcattctggacgctgtgcgtgacagacct
gaggaaacggtgatatctactgttatgctccgttcgatgaaacaggcgaaatacgacccg
caaagcttggggcacttcggtctgtcaacggaattctatacgcatttcacatcgccgatc
cgccgttacccggacttaatcgttcaccgtctaatccgtacgtatttgatcaacggcaaa
gtcgatgaagcgacacaggaaaagtgggctgaacgcctgccggatatcgctgaacataca
tcatctatggagcgccgtgcagttgacgccgagcgtgagacggatgatctgaaaaaagcg
gaatacatgcttgataaaatcggtgaagagtttgacggcatgatcagctctgtgacaaac
ttcggaatgttcgtcgagctgccgaatacaatcgaaggactcgtacacgtcagctttatg
acagatgactactaccgttttgacgaacagcatttcgcaatgatcggcgagcggacagga
aacgtcttccgcatcggggatgaaatcacagtcaaggttgtcgatgtcaataaggatgag
cgcaatatcgactttgaaatcgtcggcatgaagggctctccacgccgtccgagagaattg
gacagcagccggagcagaaaacgcggaaagcctgccagaaaacgcgttcaaagcaccaat
acacctgtttctccagcgccgtctgaggaaaaaggagaatggtttactaagccgaagaag
aaaaagaaaaaacgcggcttccaaaatgcgccgaaacagaaacggaaaaagaagaaataa
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