KEGG   Bradyrhizobium japonicum USDA 6: BJ6T_11840
Entry
BJ6T_11840        CDS       T01848                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
bju  Bradyrhizobium japonicum USDA 6
Pathway
bju03030  DNA replication
bju03410  Base excision repair
bju03420  Nucleotide excision repair
bju03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJ6T_11840
   03410 Base excision repair
    BJ6T_11840
   03420 Nucleotide excision repair
    BJ6T_11840
   03440 Homologous recombination
    BJ6T_11840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bju03032]
    BJ6T_11840
   03400 DNA repair and recombination proteins [BR:bju03400]
    BJ6T_11840
Enzymes [BR:bju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BJ6T_11840
DNA replication proteins [BR:bju03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJ6T_11840
DNA repair and recombination proteins [BR:bju03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BJ6T_11840
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJ6T_11840
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_5 Transposase_20
Other DBs
NCBI-ProteinID: BAL06475
LinkDB
Position
complement(1262575..1265616)
AA seq 1013 aa
MPKTSPKTAAKADTKPAADKPAAKPVAAKAAGKGDHIFLVDGSGYIFRAYHALPPLNRKS
DGLQVNAVLGFCNMLWKLLRDMPEDNRPTHLAIVFDKSEVTFRNKIYPEYKAHRPPAPDD
LIPQFALIREAVRAFDLPCLEQGGFEADDLIATYARQASDRGAHTTIVSSDKDLMQLVND
KIMMYDTMKDRRIGIPEVIEKFGVPPEKVVEVQALAGDSTDNVPGVPGIGIKTAAQLIVE
YGDLEQLLFRATEIKQPKRREALIENAEKARISRQLVLLDDKVELEVPLDDLAVHEPDAR
KLIAFLKAMEFSTLTRRVADYSQIDPANVDADASNSSGARVGGDAARAKTSETSGDLFAA
PAATATGGDKGDKSAGLKGAPISLAAAREEALRKLPVDRSKYQAIKTLKELDAFVARIHD
AGHVAIETRANSIDPMQADLCGIALALAPNEACYVPLAHKQSGGGAGLFDAGLAPDQVKH
ADAIEALRPVLESAGILKIGFDVKFTAVMLAQHGITLRNVDDAQLISYVLDAGRGSHAIE
ALAERWFGHAMLKESELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAE
HMTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAVRVEAEIQEIAGEPVNV
GSPKQIGDILFGKMGLSGGTKTKTGAWSTTAQVLDELAEQGHDFPKKILEWRQVSKLKST
YTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGH
KLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIEGMPSEIRRRAKA
INFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDFCRSNGYVTTLF
GRKMYYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMTRMEDALVQKKLTAQMLLQ
VHDELIFEVPDAEVEATLPVVQHVMQDAPFPAVNLSVPLHVDARAANNWDEAH
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgcccaagacctccccgaagaccgccgccaaagccgacaccaaacccgctgctgacaag
cctgctgccaagccagtcgcggcgaaggcggccggcaagggcgaccacatcttcctggtc
gacggttccggctacatcttccgcgcctatcacgcgctgccgccgctgaaccgcaagtcc
gacggcttgcaggtcaacgccgtgctcggcttctgcaacatgctgtggaagctgttgcgc
gacatgcccgaggacaaccgcccgacgcatctggcgatcgtgttcgacaagtcggaggtg
acgttccgcaacaagatctatcccgagtacaaggcacaccggccgcccgcgcccgatgat
ctgattccgcaattcgcgctgatccgcgaagccgtgcgcgccttcgatctgccctgcctc
gagcagggcggcttcgaggcggacgatctgatcgcgacctatgcgcggcaggccagcgat
cgcggcgcccacacgaccatcgtgtcctccgacaaggatttgatgcagctcgtaaacgac
aagatcatgatgtacgacaccatgaaggatcgccgcatcggcattcccgaggtgatcgag
aagttcggcgtgccgccggagaaagtcgtcgaagtgcaggcgttggccggcgattccacc
gacaacgtgcccggtgtgcccggcatcggcatcaagaccgcggcgcaactgatcgtcgaa
tatggcgacctcgaacagctcctgttccgcgccaccgagatcaagcagccgaagcggcgc
gaggcgctgatcgagaatgccgagaaggctcggatttcgcgccagctggtgctgctcgac
gacaaggtcgagctcgaggtgccgctggacgacctcgcagtgcacgagcccgacgcgcgc
aagttgattgccttcctcaaggcgatggaattttccacgctgacgcgccgcgtcgccgac
tattcgcagatcgatcccgccaatgtcgatgccgatgcgtcgaacagcagcggcgccagg
gtcggcggcgacgccgccagggcaaaaacgtcagagacctccggcgatctcttcgccgct
ccagccgcgaccgcaacgggcggcgacaagggcgataagtcggccggcctcaagggcgcg
ccgatttcactggccgccgcgcgcgaagaggcgctgcgcaagctgccggtcgaccgcagc
aaataccaggcgatcaagacgctcaaggagctcgacgccttcgtcgcgcgcatccatgac
gccggccatgtcgcgatcgagacgagagccaactccatcgacccgatgcaggccgatctc
tgcggcatcgcgctggcactggcgccgaacgaggcctgctacgtgccgctcgcgcacaag
cagtccggcggcggcgccggcctgttcgacgcgggtctcgcgccggaccaggtcaagcat
gccgacgcgatcgaggcgctgcggccggtactggaatcggcgggcattctcaagatcggc
ttcgacgtcaagttcaccgccgtgatgctggcgcagcacggcatcacgctgcgtaacgtc
gacgatgcgcagctgatctcctatgtgctcgatgccggccgcggctcgcacgcgatcgaa
gcgctcgcggagcgctggttcggccacgccatgctgaaggagagcgagctgctcggcagc
ggcaagggcaagatcaccttcgaccaggtgccgatcgacaaggccgcgccgctgtcggcg
gaaggcgccgacatggccttgcgcgtgtggcgcgtgctgaagccgcgcctcgtcgccgag
cacatgaccgccgtctacgagacgctggagcggccgctggtgtcggtgctcgcccgcatg
gagcggcgcggcatctcgatcgaccgccaggtcctgtcgcggttatcaggcgacttcgcc
cagaccgcggtgcgcgtcgaagccgagatccaggagatcgcgggcgagcccgtcaatgtc
ggcagccccaagcagatcggcgacatcctgttcggcaagatggggctgtccggcggcacc
aagaccaagaccggcgcctggtcgacgaccgcgcaggtgctcgacgagctcgccgagcag
ggccacgacttccccaagaagatcctggagtggcgccaggtctcgaaactgaaatcgacc
tacaccgacgcgctgccgacctacgtcaacccgcagacccatcgcgtccacaccacctac
gcgctggccgcgaccacgacgggccggttgtcgtcgaacgagccgaatctgcagaacatc
ccggtgcgcaccgaggacggccgaaagatccgccgtgccttcatcgcgacgcccgggcac
aagctcgtctccgccgactattcgcagatcgagctgcggctgctcgccgagatcgccgac
attcccgtcctcaagcaggcgttcaaggacgggctcgacattcacgcgatgacggcctcc
gaaatgttcggcgtgccgatcgagggcatgccgagcgaaatccggcgccgtgccaaggcg
atcaatttcggcatcatttacggcatctcggcattcggcctcgccaaccagctcggcatc
gcgcgcgaggaagcctccgcctacatcaagaagtatttcgagcgcttccccggcatccgc
gcctacatggacgagacgcgcgacttctgccggagcaacggttatgtcaccacgctgttc
ggccggaagatgtactatcccgacatcaaggcttcgaacgcctcggtgcgcgccttcaac
gagcgcgccgcgatcaacgcgcggctccagggcaccgccgccgacatcatccgccgcgcc
atgacgcggatggaggacgccctggtccagaagaagctgacggcgcagatgctgctccag
gtgcacgacgaactgatcttcgaggtgcccgacgcggaagtcgaggcgacgctaccggtg
gtgcagcacgtgatgcaggacgcgccgttcccggccgtgaacctgtcggtgccgctgcat
gtcgatgcgcgcgcggcgaacaattgggacgaggcgcactga

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