Bradyrhizobium japonicum USDA 6: BJ6T_18710
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Entry
BJ6T_18710 CDS
T01848
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bju
Bradyrhizobium japonicum USDA 6
Pathway
bju03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJ6T_18710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bju03400
]
BJ6T_18710
DNA repair and recombination proteins [BR:
bju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJ6T_18710
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJ6T_18710
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
AAA_16
SWI2_SNF2
Kinesin
Microtub_bd
DUF2963
DUF87
Motif
Other DBs
NCBI-ProteinID:
BAL07152
LinkDB
All DBs
Position
complement(1944402..1947290)
Genome browser
AA seq
962 aa
AA seq
DB search
MQPIGPALAELLNPAINRGDAGLGSGTGLQPPPDNSRDRRAGGEAAAHRARASTPKEFPQ
DTTRPMPLRPNPQPPGARASESGGFDEAPQANYGTAATIPTLDPELARQLGLPTEEDDAE
ALARPPRTKMEALGVKATADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRF
EIKSPYQPRGDQPTAIAELVEGIQRNDRSQVLLGVTGSGKTYTMAKVIEATQRPAIILAP
NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHS
ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQ
ADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYA
NSHYVTPRPTLVQAIKSIKSELKQRLDQLHDQGRLLEAQRLEQRTTFDLEMMEATGSCAG
IENYSRYLTGRLPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFRGDFRRKATLAEYG
FRLPSCMDNRPLRFEEWDMMRPQTVAVSATPGGWELNESGGVFVEQVIRPTGLIDPPVNI
RPARTQVDDLVGEVRATAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIER
IEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARN
VDGQVILYADQMTGSMERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYERDH
VLVEVGGHDMTDDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELA
VVDDPTAKQRTVQVKAGAYAGTKKYGDAANLPVSAMKKKTVSSALKASGGGSGSKVHKPH
LDEMHGPESLPYRENPSLPSKPFGSTSRIIQPTDSRQSGPEFGPAPKSTGGQPGRRGGWK
KR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtgcagccgatcgggccggcgctggccgagttgctcaatcccgcgatcaatcgcggcgat
gccggactgggatcaggcaccgggctgcagccgccgccggacaattcgcgcgaccgccgc
gccgggggcgaggctgccgcccatcgcgcacgcgcctcgacgccgaaggagtttccgcag
gatacgacgcgaccgatgccgcttcgtcccaatccgcagccgcccggggcgcgcgcttcg
gagagcggcggtttcgacgaggcgccgcaggccaattacggcaccgccgccacgatcccg
acgctcgacccggaactggcgcggcagctcggacttcccaccgaagaggacgatgccgag
gcgctggcgcggccaccgcgcaccaagatggaggcgctcggcgtcaaggccaccgcggac
gcgctggaatcgctgatccgcgagggccggccggaattccgcaaggacgacggctccacc
aaggtgtggaccccgcaccggccgccgcgcccggagaagtccgaaggcggcgtgcgcttc
gagatcaaatcgccctaccagccgcgcggcgaccagccgaccgcgatcgccgaactcgtc
gaaggcatccagcgtaacgaccgcagccaagtgctgctcggcgtcaccggaagcggcaag
acctacaccatggccaaggtgatcgaggcgacgcagcggcccgccatcatcctggcgccg
aacaagacgctcgccgcccagctctatggcgagttcaagagctttttccccgacaacgcg
gtcgagtatttcgtcagctattacgactactaccagccggaagcctacgttccacgcacc
gacacctacatcgaaaaggattcttcgatcaacgagcagatcgaccgcatgcgccactcg
gcgacgcgcgcgctgctcgaacgcgacgacgtcatcatcgtggcgtcggtgtcctgcatc
tacggtatcggctcggtcgagacctacaccgcgatgaccttcgcgctgaaaaagggcgag
cgcatcgaccagcgccagctcatcgccgacctcgtcgccctccagtacaagcgcacccag
gccgattttacccgcggcacgtttcgcgtgcgcggcgacgtcatcgacatcttcccggcg
cactatgaggaccgggcctggcgcgtgaacctgttcggcgacaccatcgagaccatcgag
gagttcgatccgctcaccggccacaagcaggatgagctcgaattcatcaagatgtatgcc
aactcgcactacgtgacgccgcgcccgacgctggtgcaggcgatcaagtcgatcaaatcg
gagctgaagcagcggctcgaccaactgcacgaccagggccgtcttctggaagcgcagcgg
ctggagcagcgcaccaccttcgatctcgagatgatggaggcgacgggaagctgcgccggc
atcgagaactattcgcgctatctcaccgggcgcctgcccggcgagccgccgccgacgctg
ttcgaatacgtccccgacaacgcgctggtgttcgccgacgagagccacgtcaccgtgccg
cagatcggcggcatgttccgcggcgacttccgccgcaaggcgacgctggccgaatacggc
ttccgtttgccctcctgcatggacaaccgcccgctccgcttcgaggagtgggacatgatg
cggccgcagacggttgcggtgtcggcaacgccgggcggctgggagctgaacgagagcggt
ggcgtgttcgtcgaacaggtgatcagaccgacggggctcattgatcctcccgtcaacatc
cgccccgcccgcacccaggtcgacgatctcgtcggcgaggtccgtgccaccgcccaggcc
ggctaccgctcgctgatcaccgtgctcaccaagcgcatggcggaggacctcaccgaatat
ctgcatgagcaggggattcgcgtccgctacatgcactccgatatcgacaccatcgagcgc
atcgagatcatccgggatctccgcctcggcgcgttcgacgcgctggtcggcatcaacctc
ttgcgcgaaggcctcgacattcccgaatgcgcgctggtcgcgattctggacgccgacaag
gaaggttttttgcgcagtgaaacgtccttgattcagaccatcggccgtgccgcgcgcaac
gtcgacggccaggtgatcctctacgccgaccagatgacgggctcgatggagcgcgccatc
gcggaaaccaaccggcgccgcgaaaagcaggtcgagtacaacaccgccaacggcatcacg
ccggagagtgtgaagaagcagatcggcgacatcctcaactccgtctacgagcgcgaccac
gtgctggtcgaggtcggcggccacgacatgaccgacgacgtcatttcgatcggtcacaat
ttcgaagccgtgctcgccgatctcgaaacccgtatgcgcgaggccgccgccgatctgaac
ttcgaggaagccgcccgcctccgcgacgaagtcaagcgcctgcgcgccacggagctcgcg
gtggtcgacgaccccaccgccaagcaacgcaccgtgcaagtcaaggccggcgcctacgcc
ggcaccaagaagtacggcgacgccgcgaatttgcccgtcagcgccatgaagaagaaaacc
gtgagctccgcgctgaaagccagcggcggcggcagcggctcgaaggtgcacaagccgcat
ctcgacgagatgcacgggccggagtcgttgccctaccgcgaaaacccgagcctgccgtca
aaaccgttcggcagcacgagccggatcatccagccgacggactcacggcagtcgggaccg
gagttcgggcccgcgccgaagtcgacgggcgggcagccggggcgacggggtgggtggaag
aagaggtag
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