Bradyrhizobium japonicum USDA 6: BJ6T_41930
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Entry
BJ6T_41930 CDS
T01848
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bju
Bradyrhizobium japonicum USDA 6
Pathway
bju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJ6T_41930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bju03019
]
BJ6T_41930
03009 Ribosome biogenesis [BR:
bju03009
]
BJ6T_41930
Enzymes [BR:
bju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJ6T_41930
Messenger RNA biogenesis [BR:
bju03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJ6T_41930
Ribosome biogenesis [BR:
bju03009
]
Prokaryotic type
rRNA helicases
BJ6T_41930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAL09466
LinkDB
All DBs
Position
4311247..4313280
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AA seq
677 aa
AA seq
DB search
MSFPALTPPLAHALAERNYDSPTPVQLAVLADEAADRDLLVSAQTGSGKTLAYGLAMARD
LFGDAERFEQAGAPLALIVAPTRELALQVQRELAWLYEHAGGRVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRGRLDISELKVVVLDEADEMLNLGFREDMEFILETTPETRR
TLMFSATFPRGIVALTKQYQQQAFRIEVAGDEGGHADIEYRVIRIAPADAEHAVVNVLRF
YEAPSALVFCSTRDHVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVAT
DVAARGIDLPSLDLVIHADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLN
LAGVDAVWGTAPQAEEIRKLDHDRMKDVLFTEETTPDDLALAHALLAERSAEDIAAALAR
LYRARLPSPEDIIDPGERAGRSRDDRGRDNVRAPRDDARTSRGDDRLERPRPKSGKSSTK
HGMADGSVWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEISERVAE
SFAAKIKRPDKEDNIRLEPMTDAPQRQAPSEERSKPPRRESGDSDHRERRDDRPRGAAGF
KPRDKAHGERRPKFDDAPSFGKKKKHKNKPGHAEPAVTPWPSKGAPGKRERRKSTGAELR
VTVQTAMMPPDCAGDII
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttccggccctgaccccgccgctcgcccacgctttggccgagcggaactatgat
tcacccacccccgtccagctcgccgtgctcgcggacgaagccgccgaccgcgacctcctg
gtttcggcccagaccggctccggcaagaccctcgcttatggcctcgccatggccagggat
ctgtttggcgatgccgagcggttcgagcaggcgggggcgccgctcgccctgatcgtggcg
ccgacccgcgagctcgccttgcaggttcagcgcgaattggcgtggctgtatgaacatgcg
ggcgggcgggtcgtctcctgcgtcggcggcatggatccgcggcgcgagcagcgcgagctt
gcggcgggcgctcacatcgtcgtcggcacgcccggccggctgtgcgatcatttgcggcgc
ggccgtctcgacatctcggaattgaaggtggtcgtcctcgacgaggccgacgagatgctc
aatctcggctttcgcgaggacatggaattcatcctcgagaccacgccggagacgcgccgc
accctgatgttctcggcgacgtttccgcgcggaatcgtggcgctgaccaagcagtatcag
cagcaggccttccggatcgaggtcgcgggcgacgagggcggtcatgccgatatcgagtat
cgcgtgatccggatcgcgcccgcggatgccgagcacgcggtcgtcaatgtgctgcggttc
tacgaggcgccgagcgcgctggtgttttgcagcacgcgcgatcacgtcaggcatttgcag
gcggcgctgctggagcgcggcttttccgttgtcgcgctgtcgggcgaattgacgcagaac
gagcggaccatggcgctgcagtcgctgcgcgacggacgggcccgagtctgcgtcgcgacc
gacgttgccgcccgcggcatcgatctgccgagcctcgacctcgtcattcacgccgacctc
ccgaacgacgctgaagtgatgcagcatcgctcgggccgcaccgggcgtgcgggacgcaag
gggacgagcgtcctgctggtgccgcccgcacggcggcggcgcgcggaactgctgctcaat
ctcgcaggcgtcgacgcggtctggggtacggcgccgcaagcggaggaaatccgcaagctc
gatcacgaccgcatgaaagacgtgctgttcacggaggaaacgacccccgacgatctcgcg
ctggcgcatgcgctgctggccgagcgatcggccgaggatatcgcagccgcactcgcgcgg
ctctatcgcgcgcggctgccgtcgcccgaagacatcatcgatcccggcgagcgagccggc
cggtcgcgcgacgatcgcgggcgcgacaatgttcgcgcaccgcgcgacgatgcccgcact
tcgcgcggcgatgatcgtctcgaaaggcctcgacccaaatcaggaaaatcgtcgacgaaa
cacggcatggcggacggcagcgtctggttccgggccaacatcggacgaagaaagaatgcg
gaagcacgctggctcttgccgatgatttgccgccgcggcggcatcgacaagggcgacatc
ggcgccatcaagatcatggacacgacgaccgagttcgaaatttccgagcgggtcgcggaa
tccttcgctgccaagatcaagcgtccggacaaggaagacaatatccgcctcgaaccgatg
acggatgcgccgcagcggcaggcaccttcggaagagcggtcaaagccgccgcggcgcgag
agcggcgacagcgatcatcgcgaacgtcgcgacgatcgcccgcgcggtgcagctggattc
aagccacgcgacaaggctcacggcgagcgcaggccgaaattcgacgatgctccttcgttc
ggaaagaaaaagaagcacaagaacaagcctggccatgccgagccggcggtcacgccgtgg
ccgtcgaagggcgcgcctggaaaaagagagcgaagaaaaagcaccggggctgaactgcgc
gtgaccgtgcagacagcaatgatgccgccggattgcgccggcgacatcatctga
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