Bos javanicus (banteng): 133236864
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Entry
133236864 CDS
T11659
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bjv Bos javanicus (banteng)
Pathway
bjv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133236864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjv03019
]
133236864
Enzymes [BR:
bjv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133236864
Messenger RNA biogenesis [BR:
bjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133236864
mRNA degradation factors
3'-5' decay
Ski complex
133236864
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
133236864
NCBI-ProteinID:
XP_061255072
LinkDB
All DBs
Position
23:complement(27340969..27351073)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAER
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSSTTSLSLRRPPAPISQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTLPPGFKKGVDFAPKGHSAPAAGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRQD
TVSASPGSVPLARASSLEDLVLKEAATTVAPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLGALEEPEVTGQLVDLPEYYRWGEELTETRSQIQHRIIESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRVFTALVLCDKPVSEDPRERGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRLNGDKILEDFSKRQQPKFKKDPPSAA
VTTAVQELLRLAQAHPTGPPTVDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRT
VAKRIGEVQAACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtagagctgggatgcactgggcgctgggagttgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaggaagcagagcgg
ttgtttctgtcatctccagcctggctgcctctgcacggtgtggagcactcagcccggaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcgtccacaacctccttgtctcttcgccggccaccagcgccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccagtataacagatctgagcactcgtgaggaggctgaggaggagatagactttgag
aaagacctccttactcttccacctggcttcaagaaaggcgtggactttgcaccaaagggt
cactcagctccagctgccgggttgctcagcctcagccgtctgctggagcccttggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagcctggcggtcccagacaggac
actgtttcagcctctcctggcagtgttcctctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcggccacaactgtagcccccccagaacctcccaagcccccacctcag
gagcagtgggccattcctgtggatgttacctcccctgttggtgatttctaccgcctcatt
ccccagccagccttccagtgggcctttgagccagatgtgtttcagaaacaggccatcctg
cacttggagcggcacgactcagtcttcgtcgcggctcacacatccgcggggaagacggtt
gtggctgaatatgccatcgcgcttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacgtttggggacgtg
gggctgctcaccggggatgtgcagctgcacccagaagcctcgtgcctcattatgacaacg
gagatccttcgctccatgctgtacagtggctcggacgtcatccgggacctggagtgggtt
atctttgatgaggttcactatatcaatgatgctgagcgcggggtcgtgtgggaggaggta
ctcatcatgctgcctgaccacgtgtccatcatccttctgagtgctactgtccccaatgcc
cttgagtttgctgactggattggacggctgaagcgtcgccagatctacgtgatcagcact
gtcgctcgcccagtgcccctggagcactatctcttcaccgggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgtggcgccttccacacaaaggggtactatgcg
gctgtggaggccaagaaggagcggatgagcaagcatgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcccaggaccgcggtgtgtacctgtccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggcctcaggcctcacctccctcgacctgacaacaagttcagagaagagtgagatt
cacctcttcctacagcgctgccttgcccgtctccgcggctctgaccgccagctgccccag
gttctgcacatgtcggagctcctgcaccgtggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggagattgtggagatgctcttcagccgcggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccggcccggacagtggtatttgactcc
atgcgcaagcacgatggctccaccttccgggacctactccctggggagtatgtgcagatg
gcgggccgggcgggccggaggggcctggaccccacaggcacggtcatcctgctctgcaag
ggccgcgtgcccgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacttgctgcgggtggatgctctc
agggtggaggacatgatgaagaggagcttctcagagtttccatctcgcaaggacagcaag
gcccatgaacaggctctggctgaactgaccaagaagttgggagctttggaagagcccgag
gtgactggccagctcgtcgacttgcctgagtactacaggtggggggaggaactgactgag
acccggagccagatccagcaccgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtggttgtgaagaatcaggagcatcacaacgcactgggtgtgatcctt
caggtctcttcgaactccaccagcagagtattcacagccctggtcttgtgtgacaagccc
gtgtctgaggacccacgggagagggggccagcctccccagacgtgccctacccagacgac
ctcgtgggattcaagctgttcctgcctgaggggccctgtgaccacactgtggccaagctc
cagccaggagacgtggccgccatcaccaccaaggtgctccggctgaatggggacaagatc
ttggaggacttcagcaagcggcagcaaccaaaattcaagaaggatccgccctctgcggcc
gtgaccaccgctgtccaggaactgctacgactggctcaggcgcaccccacaggacccccc
accgtcgaccctgtcaatgacctgcaactcaaggatgtgtctgtggtcgagggggggctc
cgggcccggaagctggaggagctgatccggggggctcagtgtgtgcacagtccccgtttc
cctgcccagtacctgaagctgcgggagaggatgcagatccagaaggagatggagcggctg
cgcttcctgctgtcggaccagtcgctgctgctgctcccggagtaccaccagcgagtagag
gtgctgcgaaccctggggtatgtggacgaggcaggcacagtgaagctggccgggcgggtg
gcttgtgccatgagcagccacgagctgctcctcaccgagctcatgttcgacaacgcactg
agcaccctgcggcctgaggagatcgctgccctgctctccggcctggtctgccagagcccc
ggggaccctggtgatcagctccccagcaccctcaaacagggggtggaacgggtccggact
gtggccaagcggattggtgaggtccaggcggcctgtggtttgaaccagaccgtggaggaa
tttgttggggagctgaatttcgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccctgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcagcccgcctggtgggcgaacct
gtgctaggtgccaagatggagacggcagccaccctgttacggagggacatcgtctttgct
gccagcctctacacccagtga
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