Bos javanicus (banteng): 133236881
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Entry
133236881 CDS
T11659
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bjv Bos javanicus (banteng)
Pathway
bjv03013
Nucleocytoplasmic transport
bjv03015
mRNA surveillance pathway
bjv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133236881 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
133236881 (DDX39B)
03015 mRNA surveillance pathway
133236881 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis
133236881 (DDX39B)
03041 Spliceosome
133236881 (DDX39B)
Enzymes [BR:
bjv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133236881 (DDX39B)
Messenger RNA biogenesis [BR:
bjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133236881 (DDX39B)
Spliceosome [BR:
bjv03041
]
Complex C
Other components
EJC/TREX
133236881 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133236881 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
133236881
NCBI-ProteinID:
XP_061255118
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Position
23:27697449..27708562
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagacg
gcagctggaggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcttgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcacgagtgtatccctcaggccatc
ctgggaatggacgtcctatgccaggctaagtcaggcatgggaaagacagcggtgtttgtg
ctggctacactgcaacaattggagccagttactggacaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctccaaatacatg
cccagcgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagctctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacggatt
ctcgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattcagatacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatataagtgagctgcctgacgagatagacatc
tcctcctacattgaacagacacggtag
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