Bos javanicus (banteng): 133251294
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Entry
133251294 CDS
T11659
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bjv Bos javanicus (banteng)
Pathway
bjv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
133251294 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bjv04147
]
133251294 (COL18A1)
00535 Proteoglycans [BR:
bjv00535
]
133251294 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bjv00536
]
133251294 (COL18A1)
Exosome [BR:
bjv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133251294 (COL18A1)
Proteoglycans [BR:
bjv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
133251294 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bjv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133251294 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
133251294
NCBI-ProteinID:
XP_061279544
LinkDB
All DBs
Position
1:145046149..145140503
Genome browser
AA seq
1770 aa
AA seq
DB search
MAPDPSSGRGHHGLLLLACCLSTAQADLFSWLWPGNSAWPIAAPASKPPDSSPVWPTEDT
TMHMAPRDAPTDGWKVSASPTAPLGRPEVGQGQTPTGPTASTVSLDPKEENIAGVGAKIL
NVAQGIRSFVQLWDNAKDTTPAESSARAETPPPTDTMDALSTPGPSITPQDSGTTLQLST
TALSSPDTQRTEAGTLPVLTQPPPSPGRPWFRESLVSPTPGRSSLSSVPARAPPRGSQLP
LGRPLQLDGEGLLLAAARPGQQHADDRRPMPPLPPLVTGSLGKHTALWALSSDPPAKLSH
VAVSALTVDSGAWAPHVANSAGPGLANKSTLLGAAELAATEQPVPTTAGRCLPLLPSLAL
CGHLGIRRSWWPNHLHHTSREEVQAAVPAWGALLRTHCHRFLAWFFCLLLAPPCRPGLPP
GLPPCRQFCEALEDACWSRLDGRGLPLPCASLPAREDGHCVFIGPPADEEVVEVGLQQLL
GEPPPWQVAMVHDPDVGSAYEFGEDGSGGGQAARRLLPGAFFQDFSLLVRVRPASARAGV
LFAVTDPAQAVVSVGVKLTAARGGRQHVQLLYTEPGATHTRTAASFELPALDGRWTRLAL
SVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLFVAQAGGADPEKFQGLISELRLRR
DPQVSPRQCQDEDEDDDDDGASGDLGSGLVETQEHLREELGAPLGPRLPEAPPVTSPPLA
GVGNEEDLRTEEVEESTTASSLGAQTLPSLGTVGTWDESVWSPGSSVKERGLKGQKGEPG
AQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPPGPPGKDGTPGRDGEPGDPGEDGKP
GDTGPPGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFKPDRLTFIDMEGSGF
GGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGRPGP
PGPPGTPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDPGPVGAPGEHGLAGAPGPAGPPGP
PGPPGPPGPGFAAGFDDMEGSGSPLWSTARGAEGLQGPPGTPGVKGDPGAVGPPGSKGEV
GADGAPGLPGLPGREGAVGPQGPKGEKGTQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVS
EQDRVLASVPGPEGRAGFAGFPGPAGPKGDLGAKGQQGIPGPKGEKGEPGTFFGPDGRAL
TPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFGMR
GPAGPPGPPGPPGPPGTPVYDSNAFVDSGRPGPPGLPGHQGPSGPKGDKGDVGPPGPPGQ
FPFDLLQLGAEMKGEKGDRGAAGQKGERGEPGGGGFFGSGVPGPPGPPGYPGIPGPKGES
IRGQPGPPGPQGPPGIGYEGPQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPG
PPGSMGTSSGGSTGLGFQQVRVWATYQMLVDQVPQVPEGWLIYVADREELYVRVRNGFRK
VLLEAHVPLPHGTDNEVAVLQPPLVQLHEGNPYPRREVPHPTARSWRADDILASPPRLPH
PQPYPGAPHHGAYAHLRPVPPTASPSHTHQDFQPVLHLVALNSPQSGGLRGIRGADFQCF
QQARAAGLAGTFRAFLSSRLQDLYSIVRRADRATLPVVNLRDEVLFPSWEALFSGSEGQL
KPGARIFSFDGRDVLQHPTWPQKSVWHGSDPSGRRLTESYCETWRTDSRAATGQASSLLA
GRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagcggccgcggccaccacggcctcctgctgcttgcctgctgc
ctctcgaccgcccaggctgacctgttctcctggctatggcctgggaacagtgcctggccc
atagctgcgccagcctccaagcccccggacagctcacctgtgtggcccacggaggatacc
accatgcacatggccccccgggatgctcccaccgacgggtggaaagtctctgccagcccc
acagcccctctggggaggccggaggtggggcagggccagacccccactggccccacggcc
tccaccgtgagcctggacccaaaggaggaaaacatcgccggcgtcggagccaagatcctg
aacgtggctcagggcatccggagcttcgtccagctgtgggacaacgctaaggacaccacc
cctgccgagagctctgccagggcagagacgccgccccccacggacaccatggacgccctc
tccacccctggaccctccatcaccccccaggacagtgggaccaccctccagctgagcacc
acggccctgagctctccagacacccagaggactgaggccggcaccctgccagtgctcacc
cagccgccaccctcccccggcagaccctggttcagggagtccttggtatcgccgacccca
ggtagatcttctctttcctccgtgccggcccgggcgcctccccggggaagccagctgcct
ctcgggcggcccctgcagctggacggtgaaggactcttgcttgcagcagcccgtcccggc
cagcagcacgctgacgaccgcaggcccatgccgcctctgcctcccctggtgacgggttcc
ctgggcaagcacactgccctctgggctctctcctctgacccccctgccaaactgtctcat
gtcgcagtctcagctctaactgtggacagtggtgcttgggctccccacgtggctaattct
gcggggcctggtcttgctaacaagtccacactgctcggggctgctgagctggctgccacc
gagcagcctgtccccaccaccgctggccgctgcctgcccctgctgccctccctggctctc
tgcggccacctgggcatcagacgctcctggtggcccaaccacctccaccacacaagtcgg
gaggaggtgcaggccgcggtcccagcctggggggcactgctccggacccactgccaccgc
ttcctggcctggttcttctgcctgctgctggcacccccctgcaggcccggcctgccgccc
ggcctgccaccctgtcgccagttctgcgaggccctggaggacgcatgctggagccgcctg
gacgggcgcgggctgccactcccctgtgcctcgctcccggcccgcgaggacgggcactgc
gtgttcatagggccaccggcagacgaagaggtcgtggaggtagggctccagcagctgctc
ggggagcccccgccctggcaggtggccatggtgcacgaccccgacgtggggtctgcctat
gagttcggcgaggatggcagcggtggaggccaggcggcccggagactcctgcctggcgcg
ttcttccaggacttctcgctgcttgtgcgtgtgcggccggcctcggcgcgcgcgggcgtg
ctctttgcggtcacagacccggcgcaggcagtggtctcggtgggcgtgaagctgacggcg
gcacgtggggggcggcagcacgtgcagctgctgtacacggagccgggagccacccacaca
cgcacagccgccagcttcgagctgcccgcgctggatggtcgctggacgcgcctggcactc
agcgtggatggcgcctatgccaggctcttcgtggactgtaaggaggtccagggccagccc
ctggcgcactcgctgcacgacctgcagctggagccggacgcccgcctcttcgtggcccag
gccggtggagcagaccctgaaaagttccagggtctgatctcagagctgaggttgcgcagg
gatcctcaggtgagcccccggcagtgccaggatgaggacgaggacgacgatgatgatggg
gcgtccggagacctgggcagcgggctcgtggagacccaggagcatctccgggaggagttg
ggtgcgcccctggggcccaggctccccgaggctcctccggtcacttctccacccttggct
ggagtcggcaacgaggaggacttgagaactgaggaagtagaggagtcaaccacagcgtct
tcattaggagctcagaccctccccagcttgggcacagttggcacgtgggatgagagtgtt
tggagccctgggagcagcgtgaaagagcgaggcctgaaggggcaaaagggagagcctggc
gctcagggcccccctggccccatcggcccccagggtcctgcaggcccagccatagacagc
catgaggcacagcctgtttctggaccacagggaccccctgggcccccgggacccccgggg
aaggacggcacccctggaagggacggtgagcctggtgatcctggtgaagacgggaagccc
ggggacactgggccaccgggcttcccagggaccccaggagacgtgggccccaagggcgag
aagggggatcctggagtcggaccgaggggacccccaggaccccaggggcctccggggccc
ccagggccctccttcaaacccgacaggctgaccttcatcgacatggagggatccggtttt
ggcggtgacctggagagcctccgcggccctcgcggcttccccggccccccggggccccct
ggcgtcccaggcctgccaggagagccaggccgcttcgggatgaacagctcggacgtccct
ggacccgcaggcctgcccggcgtgcctgggagggacgggccgcctgggcggccagggccc
ccgggacccccaggtactccaggaaaagacggacaaccaggactgactggacagaaaggc
agcctcggtgaggcaggcgccccaggacccaagggaagcaagggagaccctggccccgtc
ggcgctcctggggagcatggcctggcaggagcccctggacccgcaggcccaccagggccc
cctggccccccggggcccccgggcccaggattcgccgcagggtttgacgacatggaaggc
tccgggagccccttatggtcaacagcccgaggtgccgaggggctgcagggaccgcctggc
acgcccggagtcaagggggatcctggagctgtggggccaccagggagcaagggagaagtt
ggagcagacggagcaccgggcctccccggcctcccgggcagagagggtgcagttggaccc
cagggaccaaaaggagaaaaagggactcagggagagaaaggagacccagggaaggatgga
gtggggcagccaggactcccgggaccccccggacccccagggcctgtcgtctatgtgtcg
gagcaggatagagtgctggcgagcgtgccaggccccgagggccgtgcaggcttcgctggc
ttccccggaccagctgggccaaagggagacctgggcgccaaaggccagcagggcatcccg
ggacccaagggtgagaagggagagccgggcacattcttcggccccgatggcagagcactg
acccccgcccagaaaggagccaagggtgagcctggctttcgaggacctccgggtccgtat
gggcggcccgggcacaagggagagatcggattccctggacggccggggcgtcccgggatg
aacgggctgaaaggggagaagggggagccgggggacgccagcgtgggattcggcatgagg
ggtccagctggcccacctgggcctccggggcccccaggccctcccgggactcctgtctat
gacagcaatgcatttgtggactctggccgccctggacccccaggattgccagggcaccag
gggccttctggacccaagggcgacaaaggagacgtgggcccgcccggaccgccagggcag
ttcccgtttgacctcctccagctgggtgccgagatgaagggggagaagggggaccgaggg
gccgctgggcagaaaggagaaaggggtgagcccgggggcggaggattcttcggctctggt
gtgcctggcccccccggcccgcctggctacccagggattccgggccccaagggagagagc
atccgcggccagcccggccctccgggacctcagggaccccctggcattggctacgaggga
ccccaggggcctcctgggccccccggacccccagggcccccgggacccccttcctttcct
ggcccctacaggcagaccatcagtgttcctggcccgccaggcccacctgggcccccagga
ccccctggatccatgggcacttcttcagggggatccactgggctgggcttccagcaggtg
agggtctgggccacgtaccagatgctggtggaccaggtgccgcaggtgccggagggctgg
ctcatctacgtggctgacagggaggagctgtacgtccgggtccggaatgggttccggaag
gttctgctggaggcccacgtgcccctcccccatgggacggacaacgaggtggccgtcttg
cagcccccgctggtgcagctgcatgagggtaatccctacccccgccgggaggttccacac
ccgacagcgcggtcctggcgggcggacgacatcctggccagtcccccgcgcctgccgcac
ccccagccctaccccggcgccccgcaccacggcgcctacgcacacctccggccggtgccc
cccacggcctcgccctcccacacccaccaggacttccagccggtgctgcacctggtggcg
ctcaacagcccgcagtcgggcggcctgcgcggcatccgcggcgccgacttccagtgcttc
cagcaggcgcgcgccgcggggctggccggcaccttccgcgcgttcctgtcctcgcggttg
caggacctgtacagcatcgtgcgccgcgccgaccgtgccaccctgcccgtcgtcaacctc
agggacgaggtgctgtttcctagctgggaggccttgttctcaggctccgagggccagctg
aagcccggcgcccgcatcttctccttcgacggcagagatgtccttcagcatcccacctgg
ccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgaccgagagctac
tgcgagacgtggcggacggacagcagggcggccacgggccaggcctcctcgctgctggcg
ggccggctgctggagcagaaagccgccgggtgccacaatgccttcattgtcctctgcatc
gagaacagcttcatgacctcctcctccaagtag
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