Bos javanicus (banteng): 133258667
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Entry
133258667 CDS
T11659
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bjv Bos javanicus (banteng)
Pathway
bjv03013
Nucleocytoplasmic transport
bjv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133258667 (UPF3A)
03015 mRNA surveillance pathway
133258667 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjv03019
]
133258667 (UPF3A)
Messenger RNA biogenesis [BR:
bjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133258667 (UPF3A)
mRNA cycle factors
P-body specific factors
133258667 (UPF3A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
133258667
NCBI-ProteinID:
XP_061291471
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All DBs
Position
12:87428390..87446969
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AA seq
512 aa
AA seq
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MRSEDGAGGPGVAVATRGPSGREKPSSAESQFRRESPRREAEAPLASSSSCGSGAGKPRE
EKRTVLSKVVIRRLPPSLTKEQLEQQLHPLPAHDYFEFFTADVSLYPHLYSRAYINFRNP
DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL
ETYCVEEEKTSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRR
RELEKKRLREEEKRRRREEEKCRRKAAEKQKKTAEKEVRMKLLKKPEKGEEPSTEKPKER
AEETDPGDGKWEPCPSAVVLKPKPPEGSLEELRERSQNDSDKEQRDKERRSREKELEAQQ
CHLDDSRKHRAHHELEKCSGRNGEELARGKGSAADGGRRGSQDRGCPVEAAERPGREKSE
DRPAPRKERTGNKDRPGLQLYQPRARIRACDCDGRHPEEGRDGRRGEAEDSTVALAEKSE
EAVWGDMHVGDVGGGSPPQRSVDLRGRSFRKL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggaggacggagccgggggccccggtgtggccgttgctacgcggggtccgagc
gggagggagaaaccatcatccgcagaaagccagttccgccgggagtctccgcggcgggag
gccgaagcgccgctggcctcctcttccagctgtgggagcggcgcaggcaaacctcgcgag
gaaaagaggacggtcttgagcaaagtggtcatccggcggcttccccccagcctcaccaag
gagcagctggaacagcagctgcacccgctgcctgcacacgattatttcgagttctttact
gctgatgtcagtctttatcctcatctctactcaagagcatacattaactttagaaatcca
gatgacatccttctttttagagatcgttttgatggatatatcttcattgatagtaaaggg
ctagaatatcctgcagtggtagaatttgctccattccagaagatagccaaaaagaagcta
aagaaaaaagatgccaaaaccggaagcattgaagatgacccagagtataagaaattttta
gaaacttactgtgtggaggaggagaaaactagtgtcagtcctgaaactcttctgggagat
atagaggcaaagacacgagaacttattgctagaagaaccacacctctcttggaatatatt
aagaacagaaaattagagaagcagcgaattcgagaagaaaaacgagaggagcggaggagg
agggagctggaaaagaagcgcctacgggaagaagagaagcggaggcggcgggaggaggag
aagtgcaggaggaaagcagcagaaaaacagaagaaaacggcggagaaggaagtaaggatg
aagcttctcaaaaaaccagaaaagggagaggagccgagcactgagaaaccaaaagaaaga
gcggaggagactgaccctggagacgggaagtgggagccctgtcccagtgcggtggtcctg
aagcccaagcccccagagggctcgctggaggagctccgggagaggtcacaaaatgacagt
gataaagagcaaagggataaggagagaagatcccgagaaaaagaacttgaagcacagcaa
tgccacttggatgacagcaggaaacacagagcccaccatgagctggaaaaatgttcggga
agaaatggagaagagctggcacgggggaaggggtcggccgcagacggagggagaagaggg
agccaggataggggctgccctgtggaagcagcagagaggccgggaagggagaagagtgaa
gaccggccggcacccagaaaggagcgcacgggaaacaaggaccggccaggcttgcagctg
taccagcccagagctcgcatccgagcctgtgactgtgatggaagacaccctgaggagggc
cgcgacgggaggaggggtgaggcggaagactcaacggtggctttagctgagaagagcgaa
gaggcggtgtggggcgacatgcatgttggtgacgtgggtgggggctccccacctcaacgc
tctgtggatttgagagggcgttccttccggaagttataa
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