Bos javanicus (banteng): 133259189
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Entry
133259189 CDS
T11659
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bjv Bos javanicus (banteng)
Pathway
bjv03008
Ribosome biogenesis in eukaryotes
bjv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133259189 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
133259189 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bjv03021
]
133259189 (XRN2)
03019 Messenger RNA biogenesis [BR:
bjv03019
]
133259189 (XRN2)
03009 Ribosome biogenesis [BR:
bjv03009
]
133259189 (XRN2)
03016 Transfer RNA biogenesis [BR:
bjv03016
]
133259189 (XRN2)
Transcription machinery [BR:
bjv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133259189 (XRN2)
Messenger RNA biogenesis [BR:
bjv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133259189 (XRN2)
Ribosome biogenesis [BR:
bjv03009
]
Eukaryotic type
Pre-60S particles
RNases
133259189 (XRN2)
Transfer RNA biogenesis [BR:
bjv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133259189 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
133259189
NCBI-ProteinID:
XP_061292371
LinkDB
All DBs
Position
13:40670168..40732917
Genome browser
AA seq
951 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEGE
FIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPSFSPGGILTPHALGSRSSPGSQVASNPRQAAYEMRMQNNLSPSVSPNTSF
TSDGSPSPRGGIKRKADDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYKTGSTESVDVPPELCHGIQG
KFSLDEEAVLPNQVVCSPIPVLKDLTHNAVISINFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDPAAFRALGHVMPRGSSGTGVYSNAAPPPA
AFQGNMYRPLLRGQAQIPKLMSNVRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQT
QNAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcctgtcgatgccagtaag
cctaaccccaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccac
ccctgtacgcatcctgaagacaaaccagcaccaaaaaacgaggatgaaatgatggttgca
atctttgagtacattgacagactcttcaatattgtcagaccaagacggcttctctacatg
gcaatagatggagtggcaccgcgtgctaaaatgaaccagcagcgttcaaggaggttccga
gcatccaaagaaggcatggaagcagagatagagaagcagcgagtcagggaagagatcctg
gcgaaaggtggctatcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgaattcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggggaacataaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaacactcatcactgcttatgtggagcagatgctgatctcattatgcttggc
cttgctacacatgagcccaactttaccattatcagagaagaattcaaaccgaacaaaccc
aaaccctgtggtctttgtaatcaatttggacatgatgtcaaggactgtgagggtttgccg
agagaaaagaagggaaagcacgatgaactggcagacagccttccttgtgcagaaggagag
tttatcttcattcgtctcagtgttctccgtgagtatttggaaagagagctcaccatggcc
agcctgccgttcacgtttgatgtcgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaacgacttccttcctcacctgccatccttagagattagggaaggtgccatc
gaccgcttggttaacatatacaaaaatgtggtacacaaaaccgggggttaccttacagaa
agtggttatgtcaatctgcagagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaaaagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccatctttctctcctggtggaatattaacccct
catgcccttggttcaagaagctcaccaggatctcaagtggccagtaatccaagacaagcg
gcttatgagatgaggatgcagaataacttgagtccttcagtctctcctaatacgagtttc
acttctgacggctccccatctccgagaggaggaattaaacgaaaagcggacgacagtgac
agtgaacctgagccagaggataacgtcaggttatgggaagctggttggaaacagcgatac
tacaagaacaaatttgatgttgatgcagcagatgagaaattcagacgtaaagttgttcag
tcttacgttgaaggactctgctgggttctacgatattattaccagggctgtgcgtcctgg
aagtggtattacccattccattatgcaccattcgcttcagactttgaagggattgcagac
atgccttctgattttgagaagggtaccaaaccgtttaaaccactggaacaacttatgggg
gtttttccagctgctagtggtaactttctacctccatcatggcggaagctcatgagtgat
ccagattctagtataattgacttctaccctgaagattttgctattgatttgaatgggaag
aggtatgcatggcaaggtgtggctctgctgccatttgtggacgagcggagactgcgtgct
gccctggaagaggtgtacccagacctcacccctgaagagaccagaagaaacagtcttgga
ggcgacgtcttatttgttgggaaacatcacccactgcatgacttcattttagagctgtac
aagacaggttccacagagtcagtggatgtaccacctgaactgtgtcatgggatccaaggg
aagttttctttggatgaggaagctgttcttccaaatcaagtagtatgttctcctattcct
gtgttaaaggatctgacacacaatgctgtgatcagtatcaattttaaagacccacagttt
gctgaagattacatttttaaagctgtcatgcttccgggagcaagaaaacccgcaccggtc
ctgaaacctagtgactgggagaaatccagcaacggacggcagtggaagccccagcttggc
tttaaccgggaccggcggcctgtccacctggatcctgcagccttcagggctttgggccac
gttatgccgagaggctcctccggaactggtgtctacagcaacgctgcaccaccacctgca
gctttccaggggaacatgtaccggccactcttgcgaggacaagcccagattccaaagctc
atgtcaaatgtgaggcctcaggactcctggcgaggtccccctccccttttccagcagcaa
agatttgacagaggtgttggggccgaacctctgctaccatggaaccggatgctccaaacc
caaaatgcagccttccagccaaaccagtaccagatgctggctgggccgggcgggtatcca
cccagacgtgacgatcgtggagggagacagggatatcccagagaaggaaggaaataccct
ttgccaccaccctcaggaagatacagttggaattag
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