Bos javanicus (banteng): 133259853
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Entry
133259853 CDS
T11659
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bjv Bos javanicus (banteng)
Pathway
bjv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bjv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133259853 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bjv03041
]
133259853 (PRPF40A)
Spliceosome [BR:
bjv03041
]
Complex A
U1 snRNP components
U1 related factors
133259853 (PRPF40A)
Complex B
133259853 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
133259853
NCBI-ProteinID:
XP_061293865
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All DBs
Position
2:43541215..43600096
Genome browser
AA seq
975 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENHPPSRGLGDGERRLSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPSTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTST
PSVQDQSEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE
KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKES
FQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQL
RKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRF
TNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAI
ISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIE
LDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHH
RKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHK
SDSPESDAEREKDKKEKDREGEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGEL
EKRRRTLLEQLDDDQ
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatggtgagtgaaatggagaaccatcctccctcgcggggt
ctcggggacggggagcggagattgtccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattatgcccca
atgggaatgcatcctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgcccccaatgggaggaccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgcctta
ccgccaggagtaaataatatggatgtagcagcaggtacaacttctggcgcaaaatcaatg
tggactgaacataaatcacctgatggaaggacctactactacaatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaactcctgctgagcaacttttatctaaatgc
ccttggaaggagtacaagtctgactctggaaagccttattattacaattctcaaacaaaa
gaatctcgctgggccaaacctaaagaacttgaagatcttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaaacaagaagagtgcaccacaacatcagcagccccagttccttcaacagaaattcca
accacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagcc
gcagcagcagcagctgctgctgcagccaatgccagtgcttccacttctgcctctagtact
gtcagtggaactgttccagttgttcctgagcctgaggttacttcgattgttgctactgtt
gtagataatgaaaatacagtaacaatttctactgaagaacaagcacaacttactagtacc
ccttctgttcaggatcaaagtgaagtgtctagtaatactggagaagaaacatctaagcag
gaaactgtagctgattttactcccaaaaaagaagaggaagaaagccaaccagcaaaaaaa
acgtatacgtggaatacgaaagaggaggcaaagcaagcatttaaagaattattaaaagaa
aagcgtgtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatcca
cgatatagtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttataaagtc
caaacagagaaagaagaaaaagaagaagcaagatccaaatacaaagaggctaaggaatcc
tttcagcgttttcttgagaatcatgaaaaaatgacttccacaactagatacaaaaaagca
gagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaa
atctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttg
cgaaagaggaattgggaagccttaaaaaacatacttgacaacatggctaatgtgacatat
tctactacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagat
gaggaattacagaatatggataaagaagatgcattaatttgctttgaggaacacattcga
gctttagaaaaggaagaggaagaagaaaaacaaaagagtttgcttcgtgaaaggagacga
cagcgtaaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaa
ctgcattctatgtcatcttggatggaattgtatccaacaattagttctgacattagattc
actaatatgcttggtcagccggttttttcattaggatcaactgcacttgaccttttcaag
ttttatgttgaggatcttaaagcacgttatcatgatgaaaagaagataataaaagacatt
ctgaaggataaaggatttgtagttgaagtaaatactacttttgaagactttgtggcaata
atcagttcaactaaaagatcaaccacattagatgcaggaaatattaagctggctttcaat
agtttactagaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaag
atgaaacgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaa
ttggatgctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggat
ataactctagaatctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcat
gaatgtcaacatcatcattcaaaaaacaagaagcattctaagaaatctaaaaaacatcac
aggaagcgctcccgctctcgatcagggtcagattcagatgatgatgacagccattcaaag
aaaaaaagacagcgatcagagtctcgttctgcttcagaacattcttctagtgctgaatct
gagagaagttacaagaaatcaaaaaaacataagaagaaaagcaagaagagaagacataaa
tcagactctccagagtcagatgctgaaagagaaaaggataaaaaagaaaaagaccgggaa
ggtgaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaag
actggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggagaattg
gaaaagcgcagaaggacccttttggagcaactggatgatgatcaataa
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