Bifidobacterium catenulatum PV20-2: AH68_00920
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Entry
AH68_00920 CDS
T03496
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bka
Bifidobacterium catenulatum PV20-2
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bka03032
]
AH68_00920
03400 DNA repair and recombination proteins [BR:
bka03400
]
AH68_00920
Enzymes [BR:
bka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AH68_00920
DNA replication proteins [BR:
bka03032
]
Prokaryotic type
DNA Topoisomerases
AH68_00920
DNA repair and recombination proteins [BR:
bka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AH68_00920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AIZ13816
UniProt:
A0A0A7I1R3
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All DBs
Position
239738..242794
Genome browser
AA seq
1018 aa
AA seq
DB search
MATGSKLVIVESPTKAKKIGGYLGSEYTVMASVGHIRDLAQPSQVPAADKTKFGKFGVDV
EDGFKPYYIVDGNKKKTVSELKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKEAIKASLDNTRDVDDDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVTATLEAPDADGNNVAFDSRMVSLGGRRLAGSKDF
GADGKLTAAGAKDQVVQLDEAQASAIAQALEFATFTVASMETKPYRRRPVPPFTTSTLQQ
TAGNRLGMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAAREAVIKHFGENYLSDA
PKQYATKTAGAQEAHECIRPAGAKFRDPAEIASKVPADQLKLYTLIWQRTLACQMADATG
STATVRLSAPTESNGEAMFQASGTVIEFPGFMKATGEGRRASAESKKGDAAGSVEQAAQS
GKSSKADKKSDDNVSLPPMNPGDALAAVAVGADGHETQPPARYTEASLVKTLEQKEIGRP
STYASIISTIIDRGYVYERGRALIPSWLAFSVVKLLETKFPRYVDYEFTADMESGLDQIA
SGQETGRNWLTRFYFGSGEGAAQSADEAHAGLQQQVAQLGEIDAREINTIEIGDGLHVRV
GRYGPYLEDVNHLDDEGNPKRASLPDTLAPDELTVEVGHDLIENHSGGPRALGVDPVSGG
TVEVRNGRFGPYVALVMPSADAGADGDVAGDGKSKKGKSAKKAADRPKMASLFKTMSPES
LTLDDALRLLSLPREVGSYEEADAQTGEVQAVVVQANNGRYGPYLTKTGADGKSDTRSLA
SEDEIFTVDLDKAKELFAQPKYGRGRGRGAAKPPLRELGVDPETQKQVTIKEGFYGAYIT
DGETNRTLPKQYAPESIEPAEAFRLLAEKRAQGPSKRRGRKGAAGKGGAKKTAAKGAKAS
ADQARADRRAKVRELADKGWANTRIAKEIGSTPTTVKADVEWLSANEGYIRPAVVPAR
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggctaccggcagcaagctcgtgattgtggagtctcccaccaaggccaagaaaatcggt
gggtatttaggctccgaatatacggtgatggcctcggtcggccatattcgagatcttgcg
cagccaagccaggtgccggccgccgacaaaaccaaattcggcaagttcggcgttgacgtg
gaagacggattcaaaccgtactacatcgtcgacggcaacaagaagaaaaccgtatccgaa
ctgaaaagtgcgttgaaaaaagccgacaccctgtacctcgcaaccgatgaggatcgcgag
ggagaggccatcgcctggcatctggtacagacgctcaaaccgaaagtgccggtcaagcgc
atggtgttccacgaaatcacgaaggaagccatcaaagcgtcgcttgacaatactcgcgac
gttgacgacgacatggtcgatgcccaggagacccgccgtattctggaccgcctgtacggc
tatgagctttctccggtgctgtggcgcaaggttggtccgggtctttccgcgggccgtgtg
cagtccgtcgccacgcgtttgatcgtggagcgcgagcgcgagcgtatggcgttcgtgcgt
gctccgtattgggacgtcaccgcaacgttggaagcgccggatgccgatggcaataatgtt
gcgtttgattctcgtatggtgtcgcttggtgggcgtcgtttggcgggttccaaggatttc
ggcgccgatggcaagctgactgcggccggcgcgaaggaccaggtcgtgcagttggatgag
gcgcaggcttccgcgattgcgcaggcgttggaatttgcaacgtttaccgtcgcgtcgatg
gaaacgaagccgtaccgtcgccgtccggttccaccgtttactacgtccacattgcagcag
actgccggcaatcgtctcggcatgagctcgcgtcagaccatgcgcgcggcgcaaggattg
tatgaaaacggctatatcacctacatgcgtaccgattcggtgacgctgtcgcaggaagcg
atcgcagccgctcgtgaagcggtcatcaagcatttcggcgaaaactatctgtcggatgcg
ccgaaacaatatgccacaaaaaccgcgggcgcgcaggaagcccacgaatgcattaggccg
gcgggtgcgaaattccgcgaccctgcggaaatcgcaagcaaagtgccggccgaccagctc
aagctgtacacgctgatctggcagcgcacgcttgcctgccagatggcagacgcaaccggt
tccacggcgaccgtgcgactgtctgcaccgaccgaatcgaatggggaagccatgttccag
gcttccggtactgtcatcgaattccccggctttatgaaggcgaccggtgaaggccgccgc
gcatccgccgaatcgaagaagggcgatgctgctggaagcgttgaacaggctgcgcaatcc
ggtaaatccagcaaagcggataagaagtcggatgacaatgtgtcgctgccgccgatgaat
ccgggcgatgcgcttgccgcggtggcggttggtgccgacggacacgaaactcagcctccg
gcgcgttacaccgaagcgtcgctcgtgaaaacgttggaacagaaggaaatcggccgcccg
tccacgtatgcgagcattatttccacgattatcgatcgcggatacgtgtatgagcgcggt
cgtgcgttgattccgtcgtggctcgcgttttccgtggtcaaattgctggaaacgaagttc
ccgcggtatgtggattacgagttcactgccgatatggaaagcggtcttgaccagattgcg
agcggtcaggagaccggcaggaattggctgacccgcttctatttcggttccggtgagggt
gccgcgcagtctgcggacgaggcgcatgccggtttgcagcagcaggtcgcgcagttgggt
gaaatcgacgctcgcgagatcaatacgattgagatcggcgacggtttgcatgtgcgcgtc
ggcaggtatggcccgtatttggaggatgtgaaccatctggatgatgagggcaatccgaag
cgtgcgtcgctgccggatactctcgctccggatgagctgacggtggaagtcggtcatgat
ttgattgagaatcattccggcggtccgcgtgcacttggtgttgatccggtttccgggggc
actgttgaagtgcgtaatggtcgtttcggcccgtatgttgcgttggtgatgccttctgcg
gatgctggtgctgacggtgacgtggctggtgatggcaagtcgaagaagggcaagagcgct
aagaaggctgccgatcgcccgaagatggcgtcgttgtttaagactatgagcccggaatcg
ttgacgttggatgatgcgttgcgcctgctgagtttgcctcgtgaagttggttcttatgag
gaagcggacgctcagaccggtgaagtgcaggcggttgttgtgcaagccaataatggtcgt
tacggcccgtatttgacgaagactggtgccgatggcaagtcggatacgcgttcgctcgct
tcggaagatgagattttcacggttgatttggataaggcgaaggaactgttcgcccagccg
aagtatggccgtgggcgcggtcgtggcgctgccaagccgccgttgcgtgaactgggcgtc
gatccggaaacgcagaagcaggtgaccatcaaggaaggcttctacggcgcgtatatcacc
gatggtgaaacgaaccgtacgttgccgaagcagtatgctcccgagtcgatcgagccggct
gaggcgttccgtctgttggcggagaagcgtgcgcagggtccgtcgaagaggcgtgggcgc
aagggtgctgctggcaagggtggtgcgaagaagactgctgctaagggtgctaaggcttct
gctgatcaggctcgtgccgatcgccgtgccaaggtgcgtgagttggccgataagggttgg
gccaacacccgtatcgccaaggagatcggttccacgccgaccacggtgaaggccgatgtg
gaatggctttccgccaacgaaggctacatccgtcctgccgtagttcccgcccggtga
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