Bifidobacterium kashiwanohense PV20-2: AH68_01495
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Entry
AH68_01495 CDS
T03496
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bka
Bifidobacterium kashiwanohense PV20-2
Pathway
bka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AH68_01495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bka03019
]
AH68_01495
03016 Transfer RNA biogenesis [BR:
bka03016
]
AH68_01495
Enzymes [BR:
bka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AH68_01495
Messenger RNA biogenesis [BR:
bka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AH68_01495
Transfer RNA biogenesis [BR:
bka03016
]
Prokaryotic type
tRNA degradation factors
AH68_01495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
DUF1773
PCB_OB
S1_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
AIZ13917
UniProt:
A0A0A7I0U3
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All DBs
Position
373357..376017
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AA seq
886 aa
AA seq
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MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQAELKNIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAGEFTDMDDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVINECIDGPAEMSPYAPRIITTTVPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLADGERIDAVEDVLKEGDTVEVIVQGVD
DRGKISLAIPGFEDQESSAPRRERSDRDDRRGSRGRRDDRRSDRDDRDYDDRPRRRRSDR
DDRDYDRDDRRSDRDDRDYDDRPRRRRSDRDDRDYDDRPRRRRSDRDDRDYDRDDRRSDR
RRSSRRDDRNPRYAADENYDEYRADREERSERPRRRVRRDFDPFED
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgttgaagccgtaatcgataatggttcatttggtaag
cgcacgttgcgcttcgagaccggtcgtctcgcccagcaggcggatggtgccgttgccgcc
tatcttgacgatgattcgatgattctgtcgaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtggacgtggaagagaagatgtacgccgccggcaag
atcccgggctcgttcttccgccgtgaaggccgcccgagctccgaagctattctcgcttgc
cgtatcatcgaccgtccgctgcgcccgttgttcccacacacgctgcgcaacgaagtgcag
gttgtggaaaccgtgctcgccgtcaacccggacgatgcgtacgatgttatcgctctgaat
gctgcttccgcttccaccatgatttccggtctaccgttcgaaggcccggtttccggcgtt
cgcctggctctgatcgacggccagtgggtcgctttcccgcgttggagcgagcgtgagcgc
gccgtgttcgaaatcgtggttgcaggccgcgtagtggagaacggcgatgtcgccatcgct
atgatcgaagccggcgcaggtaagaacgcctggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgttgccggtggtcttgaagcagccaagccgttcatcaaggtg
atctgcgaggctcaggccgaactcaagaacatcgctgcgaaggaaaccaaggaattccag
ctcttcccggagtacaccgaagatctgtacaatcgtatcgatgagatcgcccacgctgat
ctcgacgaggctctctccattgccgagaagctgccgcgccaggatcgcattcatgagatc
aaggaaggcgtcaaggccactctcgccggcgaattcactgacatggacgatgccgaaaag
gaaaaggagatcggcaatgcgttcaaggagctgcagcgccagatcgtgcgtcgccgcatc
ctgacccaggattaccgcatcgatggccgtggcctgcgcgacatccgcaccctgtccgct
gaagtggacatcgttccgcgcgtgcacggttccgcactgttccagcgtggcgaaacccag
attctgggcgttaccaccctgaacatgctcaagatggaacagcagatcgacgcactgtcc
ggtccgcagtccaagcgttacatgcacaactatgagatgccgccgtactccaccggtgaa
accggtcgcgttggctccccgaagcgtcgcgaaatcggtcacggtgctctggcggagaag
gctctcgtgccggtgctgccgaaccgcgaggagttcccgtacgccatccgtcaggtctcc
gaagccattggctccaacggttccacctccatgggttccgtgtgcgcttccaccctgtcg
ctgctcgccgcaggcgtgccgctgaaggctccggttgccggcatcgccatgggcctcgtg
tccggtgatgttgacggccagcacattttcaagaccctgaccgatattctcggtgctgaa
gacgcattcggcgatatggacttcaaggtcgccggcacctccgagttcatcaccgctctg
cagctcgacaccaagctcgatggcattccggcagacattcttgcctccgctctgcagcag
gccaaggaagcccgcactaccattctcgaagtcatcaacgagtgcatcgacggcccggcc
gagatgagcccgtatgctccgcgcatcatcaccaccaccgttccggtcgacaagatcggc
gaggtcatcggaccgaagggcaagatgatcaaccagatccaagaagagactggtgcggag
atcgccatcgaagatgacggtaccgtgttcatctcctccgagggtggcgacggcgctgaa
aaggccaagcagatcatcgaacagatcgccaacccgcacgttcctgaagccggcgaaacc
tacaacggcaaggttgtgaagactacctccttcggtgccttcgtgaatctgacaccggga
accgacggcctgctgcacatctcccagatccgtaatctggccgacggcgagcgtatcgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtgatcgtgcagggcgttgac
gatcgcggcaagatctccttggccattccgggcttcgaagatcaggaatcctccgctccg
cgtcgtgagcgttccgatcgcgatgaccgtcgcggcagccgtggccgtcgtgatgatcgt
cgttccgatcgtgacgatcgtgattatgatgatcgtccgcgtcgtcgtcgttccgatcgc
gatgaccgtgattatgatcgtgatgatcgccgttccgatcgtgacgatcgtgattatgat
gatcgtccgcgtcgtcgtcgttccgatcgcgatgatcgtgattatgatgatcgtccgcgt
cgtcgtcgttccgaccgtgacgatcgtgattatgatcgtgatgatcgtcgttccgaccgt
cgccgcagcagccgccgcgacgaccgcaacccgcgttacgcagccgacgagaactacgac
gagtaccgtgccgatcgcgaagagcgttccgagcgtcctcgccgccgcgtccgccgcgac
tttgatccttttgaggactga
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