Bifidobacterium catenulatum PV20-2: AH68_08230
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Entry
AH68_08230 CDS
T03496
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bka
Bifidobacterium catenulatum PV20-2
Pathway
bka03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AH68_08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bka03021
]
AH68_08230
03400 DNA repair and recombination proteins [BR:
bka03400
]
AH68_08230
Enzymes [BR:
bka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AH68_08230
Transcription machinery [BR:
bka03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AH68_08230
DNA repair and recombination proteins [BR:
bka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AH68_08230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIZ15038
UniProt:
A0A0A7I4C9
LinkDB
All DBs
Position
complement(1846798..1850811)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNAFDKLRIGLATAEDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHEDLPGLQDEFDNDIANLEKRRNAEIEERAKKVESD
LAELEAEGEAKGSARAKLRNSAEREMAAIRIRFDEQIQRLSAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAASKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPKDFVLPKGWEPSEIEVIDPEPGSPAVVKEER
FHDGSVLFATSYGRILFNSTLPVDYPFVNDQAPKKRLSKIVDDIATRYSTAQVAATLDAL
KDMGFTRAPWSGVSFAFSDVIQPSERDEFIEKYEAEADKVNENYEIGMLTEEERRQELID
LWTKCTSEVSEAVEKHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMKVGERDAEGNLHLVKAADGGPYSRLLAADVIDPADGETVLYKAGDALSMDVLNDLVA
HDVEEVKARSVLTCDSKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFAGVIKVEDTERGRQVMLKPDDES
VEPIVYPVTRRAPMMVKDGEHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMKAVKEGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAVVEPDKAIRDTIYPNFGLGGDESDAAFGDADLSEVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQMDLGDTL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggatcggcctggccactgccgaagacatc
cgtaattggagccacggcgaggtcaagaagcctgaaaccattaactaccgtaccctgaag
ccggagaaagacggtctgttcggcgaacagatcttcggacctacccgtgactgggagtgc
gcctgcggtaagtacaagcgcgtgcgcttcaagggcatcgtctgcgaacgctgcggtgtg
gaagtcaccaagagccgtgtgcgccgtgagcgcatgggccatatcgagcttgccgctccg
gtgacccacatctggttcttcaagggtgttccgtcccgtttgggctacctgctggacatc
gctccgaaggatctggaaaaggtcatctacttcgctgcctacatggttaccagcgtcgat
gaggaacagcgtcacgaggatcttccgggtctgcaggatgagttcgacaacgacatcgcc
aatctggagaagcgtcgcaacgcggaaatcgaagagcgtgccaagaaagttgaatccgat
ctggccgaacttgaggccgaaggtgaagccaagggctccgcacgcgccaagctgcgcaac
agcgccgagcgtgaaatggccgcgatccgcatccgtttcgacgagcagattcagcgtctg
agcgccgtgttcgaccgcttcaagaacctgaagccgggcgacatggaaggcgacgtcgac
ctgtggcgcgaaatggaagaccgctacggcgactacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgcttgcaggacttcgatcttgaggccgcttccaagcagctgcgtgag
gaaatcgacaccggcaccggccagcgcaaggcccgcgccctgaagcgtctgaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaagccatggtgctcgacgtgatcccggtc
attccgccggatctgcgtccgatggtgcagctcgacggtggccgtttcgccacttccgat
ctcaacgacctctatcgtcgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgctcctgaaatcatgctcaacaacgaaaagcgtatgcttcaggaagccgtcgac
tccctgttcgacaacggtcgtcgtggacgcccggtcaccggcgcttcgaaccgcccgctg
aagtccctgagtgacatgctcaagggcaagcagggtcgtttccgtcagaacctgcttggt
aagcgtgtggactactccggccgttccgtgatcgtggtcggtccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgt
cttgtggacctcaactacgcgcagaacatgaagagcgccaagcgtcttgtggaccgtggc
gattccgaagtgtggggtgtgctcgaagaggtcatcgccgaacatccggtgcttctgaac
cgtgcacctacgctgcaccgtctgggcattcaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccaccgcttgcctgtgccgcattcaatgccgacttcgatggcgac
cagatggcagtccacctgccgctgtccgctgaagcccaggccgaggcccgctccctgatg
atggcttccgacaacattctgaagccggcagacggccacaccgtgaccatgccgagccag
gacatgatcctcggtctgtactacctgaccaccgtcatcgacggagccaagggccagggc
cgtgtgttctcctcgctcgaagaggccgaaatggcgctcgacaagcacgagatcgacatg
caggccaaggtgcttatccgccttccgaaagacttcgtgcttccgaagggttgggaaccg
agcgaaatcgaagtcatcgatcctgaaccgggcagcccggcggtagtgaaggaagagcgc
ttccacgatggttccgtgcttttcgcgacctcctacggccgcatcctgttcaacagcacg
ctgccggtcgactacccgttcgtgaatgatcaggctccgaagaagcgtctgagcaagatc
gtcgacgacatcgcaacccgttactccactgcacaggtggctgcaacgctggacgctctg
aaggatatgggcttcacccgcgcaccgtggtccggtgtgtccttcgcgttctccgacgtt
atccagccgtccgagcgcgacgagttcatcgagaagtacgaagccgaagccgacaaggtc
aacgagaactacgaaatcggtatgcttaccgaagaggagcgccgccaggaactcatcgac
ctgtggaccaagtgcaccagtgaggtttccgaggctgtcgagaaacacttcgactccaag
aacaatctggctatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggtatgcgaggcctcgtggccaacccgaagggcgagatcattcctcgacctgtg
aagtccaactaccgcgacggcctgtccgtgctggaatacttcatctcccagcacggcgcg
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggttacctgacccgtcgt
ctggtggacgtctcccaggacgtgattgtgcgcgaagaggattgcggcaccaagcgcggc
ctgacgatgaaggtcggcgagcgtgacgctgaaggcaacctgcatctcgtcaaggctgcc
gacggtggtccgtactcccgcctgctcgcagctgacgtgatcgatccagccgacggcgaa
accgtgctgtacaaggccggcgacgcgctgtccatggacgtgctcaacgatctcgtcgcc
cacgatgtggaagaagtcaaggcccgttccgtgctcacttgcgattccaagcgcggtgtg
tgcgccaagtgctatggctggtctctggccaccaacaagcttgtggacgtcggcgaggcc
gttggcatcgtggcagcacagtccatcggcgagcctggtacccagctgacgctgcgttcc
ttccactccggcggcgtcgcttccgcatccgatatcacccagggtcttcctcgtgttacc
gagcttttcgaagctcgtaccccgaagggcgaggctccgatcgcggagttcgcaggcgtg
atcaaggtggaagacaccgagcgcggccgtcaggtcatgctgaagccggacgacgaatcc
gtcgaaccgatcgtctacccggtaacccgtcgcgccccgatgatggtcaaggacggcgag
catgtcgaagctggcacccagctgatcgaaggctccgtcgatcctaagaagatcctgcgc
atcctcggccctcgtgccgcccaagtgaacattgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgtatcacggtgatcgattccggcgataccgacctgcttccgggtgaactggtggatcag
gcccgcttcaaggccgccaatatgaaggccgtgaaggaaggtggcaagcctgccgccggt
cgtccggagctgatgggcatcaccaaggcttcgctggcaaccgattcctggctgtccgcg
gcttccttccaggagaccacccgcgtgctcaccgaagccgccctgagccagaaggtcgac
gacctgaagggcctcaaggagaacgtcatcatcggtaagctcattccggccggtaccggt
cttgcccgttaccgtaacgccgtggtcgagcccgacaaggccattcgcgacaccatctac
ccgaacttcggtttgggtggcgacgagtccgatgctgccttcggcgatgcggatctgtcc
gaagtcgacttctccaacatcgatttcggcgatctgaagcttggcgacgacttcaatccg
gatgacttcctggacgacaatggtggtcagatggatttgggcgacaccctgtga
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integrated database retrieval system
