KEGG   Bubalus kerabau (carabao): 129621906
Entry
129621906         CDS       T11435                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
bke  Bubalus kerabau (carabao)
Pathway
bke03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    129621906 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bke03400]
    129621906 (TDP1)
DNA repair and recombination proteins [BR:bke03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     129621906 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 129621906
NCBI-ProteinID: XP_055394867
LinkDB
Position
10:106768966..106843470
AA seq 612 aa
MVSQEGNYGKWTISSSDESEEEKPQPDKPSASLLPEARQGAAGQLKYTCSEARKAAHRRK
LEPMKFSSTDSVSEASPCKRQKTGSQEDLGWCLSSSEDELPRELQQEQAKDSRVKEEKGP
LSPRDRTARGAGPHSPPTSCGLPEEEDEQETSGEGQDVWDLLDKGNPFQFYLTRVSGIKP
KYNTGALHIKDILSPLFGTLVSSAQFNYCFDVDWLIRQYPPEFRKKPVLLVHGDKREAKA
HLLAEAKPYGNVTLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIREDWHQKTQGI
WLSPLYPRVVHGTHGSGESATNFKADLISYLGAYNAAPLKEWIDTIREHDLSETNVYLIA
STPGRFQGNQKDNWGHFRLRKLLKEHASPMPKAESWPVIGQFSSIGSMGADESKWLCSEF
KESLVTLGKESRTLGSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAQKQNWLHSYF
HKWSADTSGRSNAMPHIKTYLRPSPDFSQIAWFLVTSANLSKAAWGALEKNGTQLMIRSY
ELGVLFLPSAFGLDSFKVKQKFFSGSSQEPTASFPVPYDLPPELYGDRDRPWIWNIPYVK
APDTHGNMWVPS
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggtgtcccaggaaggcaattatgggaagtggacgatatccagtagtgatgaaagtgag
gaggagaagccgcagccagacaagccatctgcctctctcctccccgaggccaggcagggt
gccgccgggcagctgaagtacacctgctccgaggctcggaaagccgcccacaggaggaag
ctggagcccatgaaattcagcagcacagactcagtttcagaagcttcaccttgcaaaaga
cagaagaccggttcccaggaggacctgggctggtgtctgtccagcagtgaggatgaactg
cctcgagagctgcagcaggagcaggcgaaggactcgagggtcaaagaggagaaaggcccc
ctttctcccagggaccgcacggctcggggagctgggcctcacagccccccaaccagctgt
gggctcccggaggaggaagatgagcaggaaacatcaggggaaggccaggacgtctgggac
ttgctggataaagggaaccccttccagttctacctcacgagagtctctgggattaagccc
aagtataacacgggagccctccacatcaaggatattttatctcctctctttgggacactt
gtttcttcagctcagtttaactactgctttgacgtggactggctcataagacagtatcca
ccagagttcaggaagaaaccagtcctgcttgtgcatggcgacaaacgggaagcaaaggct
cacctccttgccgaggcgaagccttacgggaacgtcaccctctgccaggcaaagttggat
attgcatttggaacacaccacacgaaaatgatgcttctgctgtatgaggaaggcctccgg
gtcgtcatacacacgtcgaacctcatccgcgaggactggcaccagaaaacacagggaata
tggttgagccccttgtaccccagagtcgtccacgggacccacggatctggagaatcggcc
acaaacttcaaagctgacctcatcagctacctgggggcttataacgctgcccctctcaag
gagtggatagacaccatccgggagcacgacctctcagaaacaaatgtttaccttattgcc
tcaaccccgggacgctttcaaggaaatcagaaagataattggggacatttcaggcttagg
aagcttctaaaagagcacgcctcacccatgcctaaagcagagtcttggccggtcataggt
cagttctccagcattggctccatgggggcagacgaatcaaaatggttgtgttctgagttt
aaggagagcctggtgaccctgggcaaggagagcaggaccctaggaagtgctgttcctctc
catctgatctatccttcagtggaaaatgtgcggaccagcttagaaggatatccagctggg
ggctctcttccctatagcatccagacggcgcagaaacagaattggcttcattcctatttt
cacaagtggtcagctgacacgtcaggccgcagcaacgccatgccacatattaagacgtac
ctgagaccctctccagacttcagtcagatcgcttggttccttgtcacaagcgccaacctg
tccaaggctgcctggggcgcgctggagaagaatggcacccagctgatgatccgctcctac
gagcttggcgtcctctttctgccgtcagcgtttggcctggacagtttcaaagtgaaacag
aaattcttctctgggagcagccaggagcccacagcctccttccctgtgccgtacgaccta
cctccagaactgtacggagacagagatcgaccatggatttggaacatcccttatgtcaaa
gcacctgatacacacgggaacatgtgggttccctcctga

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