Bubalus kerabau (carabao): 129623357
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Entry
129623357 CDS
T11435
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
bke Bubalus kerabau (carabao)
Pathway
bke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129623357 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bke04121
]
129623357 (TRIM54)
Ubiquitin system [BR:
bke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129623357 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_6
TRIM_CC
PHP
Sina_RING
CoiA_N
DUF349
Mod_r
DUF1421
FlgN
Zn_ribbon_FGT1_2
DD_DDX21-DDX50
COG2_C
MIF4G_like_2
DUF5799
GH123_cat
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
129623357
NCBI-ProteinID:
XP_055396666
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All DBs
Position
11:complement(75194372..75216294)
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AA seq
366 aa
AA seq
DB search
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRSSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM
LVAGNDRVQAVITQMEEVCQTIEENSRRQKQLLNQRFEGLCAVLEERKGELLQALAREQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGTMSKVELAG
RPEPGYERMDQFTVSVEHVAEMLRTIDFQPGTSGEEEDEEVAVEGEEGNAGPEEERTDGR
ESTGQH
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcacggtgggtttcaagccgctgctaggggatgcacacagcatggacaacctg
gagaagcagctcatttgccccatctgcctggagatgttctccaaaccggtggtgatccta
ccctgccagcacaacctgtgccgcaagtgtgccaacgatgtcttccaggcctcgaaccct
ctgtggcagtcccggagctccaccactgtgtcttcggggggccgtttccgctgcccatct
tgcaggcacgaggtggtcctggatcgacatggcgtctacggcctgcagcggaacctgctc
gtggagaacattatcgacatttacaagcaggagtcctcccggccactgcattccaaggct
gagcagcacctcatgtgtgaggagcatgaagacgagaagatcaatatctactgtctgagc
tgtgaagtgcccacctgctctctctgcaaggtctttggtgcccacaaggactgtgaggtg
gccccactgcccaccatttacaaacgtcagaagagtgagctcagcgatggcatcgcgatg
ctggtggccggcaatgaccgtgtgcaagcagtgatcacacagatggaggaggtgtgccag
accatcgaggaaaacagccggaggcagaagcagttgctgaaccagaggtttgagggcctg
tgtgcagtgctggaggagcggaagggtgagctgctgcaggcgctggcccgggagcaggag
gagaagctgcagcgagtcaggggcctcatccgccagtacggagaccacctggaggcctcc
tctaagctggtggagtctgccatccagtccatggaggagccgcagatggcgctctacctg
cagcaggccaaggagttgatcaataaggtcgggacgatgtcgaaggtggagctggccggc
cggccagagccgggctatgaaagaatggatcaattcaccgtgagcgtggagcatgtggcc
gaaatgctgaggaccatcgacttccagccaggcacttctggggaggaagaggatgaggag
gtcgcggtagaaggggaagagggcaacgcaggaccagaggaagagcggacggatgggcgg
gaaagcacaggccagcactga
DBGET
integrated database retrieval system
