Bubalus kerabau (carabao): 129623477
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Entry
129623477 CDS
T11435
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129623477 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bke03021
]
129623477 (CPSF3)
03019 Messenger RNA biogenesis [BR:
bke03019
]
129623477 (CPSF3)
Transcription machinery [BR:
bke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129623477 (CPSF3)
Messenger RNA biogenesis [BR:
bke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129623477 (CPSF3)
U7-dependent histone pre-mRNA processing factors
129623477 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
129623477
NCBI-ProteinID:
XP_055396957
LinkDB
All DBs
Position
11:complement(90738661..90772127)
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgattcctgcagaggagagtgaccagctgctgatccgaccccttggagctggg
caggaagtgggaagatcatgtattattctggagttcaaggggaggaagataatgctggac
tgtgggatccatcctggcctggaaggaatggatgctcttccttatattgatttgattgac
ccagctgagattgatctcctactaattagtcatttccatttggatcactgtggagctttg
ccctggtttctacagaagacaagtttcaaaggaagaacatttatgactcatgctacaaaa
gctatttatagatggcttctttcagattatgtcaaagttagtaacatatcagcagacgac
atgctgtatactgagacagatttggaagaaagcatggacaaaattgaaaccatcaatttt
catgaagtgaaggaagttgcaggaatcaagttttggtgttatcacgccggccatgtcctg
ggagctgccatgttcatgatcgagatcgcgggcgtgaagcttttatacacaggtgatttc
tcaagacaagaagacagacacttaatggcagctgaaattcctaacattaaacctgatatt
cttatcattgaatctacttatgggacccatatccacgagaagcgagaggagcgagaggca
aggttctgtaacaccgtccatgatattgtgaacagagggggccgaggcctcattcccgtc
tttgctctcggacgggcccaggagctcctcttgattttagatgagtactggcagaatcac
ccagaactccatgatattccaatatactatgcatcatctttggccaagaagtgtatggca
gtgtaccagacatatgtgaacgccatgaatgacaaaatccgcaaacagatcaacatcaat
aatccatttgttttcaaacacattagtaacctgaagagcatggatcattttgatgacatt
ggtcccagcgtggtcatggcctccccaggcatgatgcaaagtggtttatccagagagctc
tttgaaagctggtgtactgataagaggaacggcgtcatcatagccggctactgtgtagaa
ggcacacttgccaagcatatcatgtctgaacctgaagaaatcactaccatgtccgggcag
aagttacctctgaaaatgtctgttgattacatctctttctctgcgcacacggattaccag
caaaccagtgaatttatacgtgctttgaagccgcctcacgtgattttagtccatggagaa
cagaatgaaatggccagattgaaagcagccctgattcgagaatatgaagataatgatgaa
gttcacatagaggttcataatcctcggaatacagaagcagtgaccttgaacttcagggga
gaaaaactagccaaggtcatgggctttttagcagacaaaaaaccagaacagggccagcgg
gtctcaggaatacttgttaaaagaaactttaattatcacatactttctccttgtgacctc
tccaattatactgacttggccatgagcactgtaaaacagacccaagccattccatatact
ggtccttttaatttgctctattaccagctacagaaattgacaggtgatgtggaagaatta
gaaattcaagaaaagcctgctttgaaagtgtttaaaaatattactgtaatacaggaacca
ggaatggtggtattagaatggttggcaaatccttccaatgatatgtatgcagatacagtc
acaaccgtgatattagaagttcagtcaaacccaaaaataaggaaaggtgcagtacagaag
gtttctaaaaaattagaaatgcacgtttacagcaagaggctggagatcatgctccaggac
atatttggagaagactgtgttagtgtaaaagatggttctattcttagtgtcacagtggat
ggaaaaactgctaacataaatttggagacacggactgtagaatgtgaagaaggcagtgaa
gatgacgagtccctccgagaaatggtggaattggcagcccagagactgtacgaggccctc
acacccgtccactga
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