Bubalus kerabau (carabao): 129623523
Help
Entry
129623523 CDS
T11435
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
bke Bubalus kerabau (carabao)
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bke03000
]
129623523 (RC3H2)
04121 Ubiquitin system [BR:
bke04121
]
129623523 (RC3H2)
Transcription factors [BR:
bke03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129623523 (RC3H2)
Ubiquitin system [BR:
bke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129623523 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
129623523
NCBI-ProteinID:
XP_055397044
LinkDB
All DBs
Position
11:complement(96840471..96893427)
Genome browser
AA seq
1189 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSVKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAIRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVQSTNGISNAENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNAAGPSVE
SVTENKIGSPPKTPVSNVAATSAGPTSAGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPE
QWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRTDFSENVSGTKFEDDHLSHYSPWS
CGTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGP
IISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATS
SAHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDE
GRHLTLNLLSKEIELRNGESDYTEDAADTKPDRDIELELSALDTDEPDGQGEQIEEILDI
QLGISSQNDQLLNGTAVENGHPVQQHQEEPLEQKRQSLGEDRVILEEQKTILPVTSCFSQ
PLPVSISNASGLPITTSVSVGNLILKTHVMSEDKNDFLKSVANGKMVNS
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaacgtgcacaaacccatcagtttaggttgttcacacactgtttgtaagacc
tgtttgaataaacttcaccgaaaagcttgtcctttcgaccagactgccatcaacacagac
attgatgtgcttcctgtcaacttcgcacttctccagttagttggagcccaggtaccagat
catcagtcagtaaagttaagtaatttaggtgagaacaaacactatgaggttgcaaagaaa
tgtgttgaagatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgcactgagccgtccaatgcaaaggaaactagtgacacttgtaaactgt
cagctggtggaggaagaaggtcgtgtaagagccatacgcgcagcccgttcacttggagaa
aggactgtaacggagctaatattacagcaccagaaccctcagcagttgtctgccaaccta
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggct
ttgaagttggtgttactggcattagaagatggttctgctctctcaaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggatgaagac
tcttctctgatgcagctaaaggaggaattccgcagttatgaggctttacgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgagcaatgg
tcctcacttttgtatggtgacttggcgcataaatcacacatgcagtctatcattgataag
ctgcagtctcctgaatcctttgcaaagagtgttcaggaattgacaattgttttgcaacga
acaggtgacccagctaacttaaatagattgaggcctcacttagagcttcttgcaaatata
gaccctaatccagatgctgtttcaccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggcctagtagacttcatacaaaattatagtagaaaaggccat
gagacacctcagcctcagccaaacagcaaatacaagaccagcatgtgtcgagatttgcga
cagcaaggagggtgtccacgaggaacaaattgtacttttgcccattctcaggaagagctt
gaaaagtatcgattaaggaacaaaaagatcaatgcaactgtaagaacgtttcctcttcta
aataaagttggtgtaaacaacactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttcaaagtacaaatggaatttcaaatgcagaa
aacagtgtttcccagctaattccacgtagtactgacagtacattaagagctctggagact
gtgaagaaagtggggaaggttggcaccaatggtcagaatgctgctgggccttctgtagag
tctgtaactgaaaataaaattggctctccacccaagactcctgtaagtaatgtagcagct
acctcagctgggcccactagtgctggaacagagctgaattctgtgcctccaaaatccagc
ccatttatcactagagtaccagtatatcctcagcattctgaaaacatacagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacagacgggatactaccca
ccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttccatgccatatgccgatcattacagtaca
ttttcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagccgtat
ggaccagttcccccagtaccttctggaatgtatgctcctgtgtacgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcgtcagtgtatcagacgtctttgcgggaaagatataactcattagat
gggtattattcagtggcttgtcagccaccaagtgagccaaggacaactgtgcctttacca
agggaaccttgtggtcatttgaagaccagttgcgaggagcagataagaagaaagccagag
cagtgggcacagtaccacactcagaaagcacctcttgtctcttcaactcttcctgtggca
acacagtcaccaacaccaccttctcctctattcagtgtagactttcgcactgatttctct
gaaaatgtgagtggcacaaaatttgaagatgatcatctttcccattattctccctggtct
tgtggcaccatcggttcttgtataaatgccattgattcagagcccagagatgtgattgct
aattcaaatgcggtattaatggacctggacagtggggatgttaagagaagagtgcattta
tttgaaactcagagaaggacaaaagaagaagatccaataattccttttagtgatggaccc
atcatctcaaaatggggtgcgatttctagatcttcccgtactggttaccataccacggac
cctgtccaggccactgcttcccaaggaagtgcaaccaagcccatcagtgtatcagattat
gtaccttatgtcaatgctgttgattcaaggtggagttcatatggtaatgaggctacatca
tcagcacattatattgaacgggacagattcattgttaccgatttatctggtcatagaaag
cattccagtactggagaccttttgagcattgaacttcagcaggccaagagtaactcattg
cttcttcagagggaggccaatgctctggctatgcaacagaagtggaattccctggatgaa
ggccgtcacctcacattaaatcttctaagtaaggaaattgaactgagaaatggagagagt
gattatacagaagatgcagctgatactaagcctgatagggatattgagttagagctgtca
gcacttgatactgatgaacctgatggacaaggtgaacagattgaagagatcctggacata
cagcttggtatcagttctcaaaatgatcagttgctgaatggaacagcagtagagaatggg
catccagtccagcagcaccaagaggagcctctggagcagaagagacagagtttaggtgaa
gaccgtgtgattctggaagagcaaaaaacaattctgccggtaacttcttgctttagccag
ccactcccagtgtccatcagcaatgcaagtggcctacccatcaccacatctgtcagtgtt
ggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgactttttaaaatct
gttgcaaatgggaaaatggttaatagctga
DBGET
integrated database retrieval system
