Bubalus kerabau (carabao): 129623678
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Entry
129623678 CDS
T11435
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
bke Bubalus kerabau (carabao)
Pathway
bke05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
129623678 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bke03021
]
129623678 (SETX)
Enzymes [BR:
bke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129623678 (SETX)
5.6.2.5 RNA 5'-3' helicase
129623678 (SETX)
Transcription machinery [BR:
bke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129623678 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129623678
NCBI-ProteinID:
XP_055397441
LinkDB
All DBs
Position
11:complement(105103373..105213290)
Genome browser
AA seq
2695 aa
AA seq
DB search
MVPSSKNTDEINKTAFQKKCRMSTCCWCTPGGTSTTDFLQRYASKTHSSEFKTADEDLCY
CLECVAEYHKAREELPFLHEVLWELETLRLINHFERSMKAEIGDDDELYIVDNNGEAQLF
DFTGQDFENKLRVPLLEILKYPYLLLHEHVNELCVEALCRMEQANCSFQVFDKHPGIYLF
LVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLENPDIYTSSVLEKG
KLVLLPSHMYDTANYKNYWLGICMLLTILEEQAMDSLLLGPDKQNDFMQSILHTMERQSN
DDSVDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSMRTK
LEPEPYLDDMVTCSQIVYNYNPEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQ
DMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFL
LILVSVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFARSSEKSSGNCSKGTAMIS
SLSLHSMPSNSVQLACVQLIRSLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTSQ
ETHELQTCLKQIIRNIKFKVPQCSTFVDLNPACKTPPASYKEESEQIGKKSEKDAHCLEN
SSPTSSKEPMKADAYQVQESILSKANNAIEESKEPYYIKDLKLEGHLSAESCLKLSSKNL
ACERVQNQVKISTGKYKSVKENSSCTPQNGTLRNGPEKVFDRGIIISRRLLTVSSTDSLE
KVSASNEDFSLKEDGLGKSSKAKSKTHKDGVCAKLSHVIKKQHRRSISLEENLTVSSIEG
FYSKKDIGGQKGGGNICNPSLVPNGILDDKNGEQKSQSCLLLRKKEVKKEKLDIFSTPEN
SCQIQECHVDTKDLVSLTEMTNTFMTKASPFKEPVTGHESRDMKISRSIDQFSSHLREQD
FSSSPQPDTLTDSQVDRDLHKLSLIAQASVTKFPSDSTEKSLSQIQRKVKDEKRCFTANQ
NIRETCCEQVIIISDSDDDEDERILGLKKQMKEIKACIEKECPEQHTSIANTNVEQKVLI
KEENPVSLLEFEESDSQFFEFETPCEVFSVWHDQKPDKNSAQENEKNPCSTHVSDSTNDL
GYETDYVPEEVIKKVAENFEERTKPRSSSTSVEEFCDIEVKPKRRRYEKPIAEDPLRPSS
SSVKNEDQSDILNKGNVSKNDFKGIDARSTVPSSSVQRNAVVSPKKSLPKPRMYSKPVRK
VPVVKASKKSHSDTKKGQSKSSHYISCRTTPAIVPPKKFRQCPEPTSVVEKLGLKKAPRR
AFELSQGSSECLSRLRDHGRTVGVVDTRKKTKLISPRTLSVRNNKKLLTSQDLQFQRQMR
SKSQQNRQKRFDCRSTDKTRAGPRAAQSSAVPESNKSDYSHGGAEVTANNKGKQLLTCQS
SETEPMKAGKQLLTCQSSETEPVKANQCNPVMVNGRIATNEVIVPTSENLLDRGDLTVHH
LELATLKEEEPELSSDIEEDDIFLTQRDPEDMDLCSQIERENDKLIEVIHGKDTVQGEEE
CVSQPQLESLSSTKCKYKDCVETLKNLGEYCSKHSKTNATDEDVFRKPGLPLSASKRSRP
STTKVFSSSSTSRIAGLSKSLESTAALPSSLKNKSSGAQSVLKGPQPPLKPVAEVKGLCN
VFPAQTPNNSNRQVLKVPFGESRPFLTSSPVNILTSSQSISDTFVKEVLKWRYEMFVNFD
QCGPPSSLCQCIARRVPIRFQDCGDYFNVFFPLMVLNTFETVAQEWISSPNKEKFHQLHL
RKFPDDYKKYWEFVVYLEECELAKQLHPRENDLVFLVPERLNEEKKDLEWSHLEDACEYY
CGYVHKFRRTSVMHNGKFECSVSIQTQDNLPVNLNELVKCFVISSLVTTQRKLKAMSLLS
GRNQLARAILNPNPMDFCTKDLLTATSERIVAYLKDFNDDQKKAIETACAMVKHSPSVAK
ICLIHGPPGTGKSKTIVGILYRLLTENQRRGCSDENSNAKIKQNRVLVCAPSNAAVDELM
KKIIIEFKEKCKDKKNPMGNCGDINLVRLGPEKSINNEVLRFSLDSQVNHRMKKDLPSHV
QEMHKRKEFLDRQLDELSRQRALCRGGRESQRQELDGKIARVSKERQELASKIKEVQGRP
QKTQSIIILESHIICCTLSTSGGLLLETAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIH
RCNKLVLVGDPKQLPPTVISVKAQDYGYDQSMMARFHKFLEESVEHNMIGRLPVLQLTIQ
YRMHPDICLFPSSYIYDGILRTNRGTETSRCSSDWPFQPYLVFDVGDGLERRDNDSYVNV
QEIKLVMELIKLIKDKRRDITFRNIGIITHYKAQKTLIQKDLDKEFDRKGAAEVDTVDAF
QGRQKDCVIVTCVRANATQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLVENRHWYHL
IQDAQKRGAIIKTCDKNYRHDAMKILKLKPLLQRSLTHPPAVTPEASRPQGGLPSSKQDG
ELSKTSFASSIYHSPSDSKEATVTEAAKDPERPPNQDWLRDPRLLRRMGLALDAQGISLR
ELQPLSPQHSGAAPPSGVPGCPGSPQEPGTVRQQGVTLNSHMPRMPCDSPAASTDTSTSA
KKCDQEEGALGHRREARSLSAGDQAWWASSHTKRNSDWDERVLEEDSCSKKRRVL
NT seq
8088 nt
NT seq
+upstream
nt +downstream
nt
atggttcccagcagtaaaaacactgatgaaattaacaaaactgccttccagaagaagtgc
agaatgagtacatgttgttggtgtaccccaggtggtacttccaccactgacttcctgcaa
cgctatgcatccaagacccactccagtgaatttaagacagctgatgaagacctctgctac
tgcttggagtgtgtggctgaataccacaaggcaagggaggaattgccgttcttacatgag
gttttatgggaattagaaaccttacgtctcataaatcactttgaaagatccatgaaggca
gaaattggagatgatgatgagttatatatagtagacaacaacggagaggcacagctgttc
gatttcactggccaagactttgaaaacaagcttcgagttcctcttcttgaaatactaaaa
tatccatatctgcttttacatgagcatgtcaatgaattatgtgttgaagcactttgccgg
atggaacaagctaattgctcctttcaagtttttgacaaacatccagggatctatttattt
ttggttcatcccaatgaaatggttcggcgttgggctatcctgactgcaagaaacttgggg
aaagtggatagagatgattactatgacttacaggaggttttgacttgcctttttaaagtt
attgagttgggacttttagaaaacccagacatttatacttcttctgtccttgagaagggt
aaactggttcttctgccttcacacatgtatgatactgccaactacaaaaactattggtta
ggtatttgcatgctgctgaccattcttgaggagcaagccatggattcactgttgttgggc
ccagataaacagaatgattttatgcagtcaatacttcacaccatggagaggcaatcaaat
gatgatagtgtggatcctttctggccagcattacactgtttcatggtgattctggatcgc
cttggatctaaggtctggggtcaacttattgatcctattgaagcatttcaaaccattatt
aacaacgtgagctacaatagagagatccagaacatacggaacagctctatgaggaccaag
ttagaaccggagccatatttggatgatatggtgacttgcagccagattgtatacaattat
aatcctgaaaagaccaaaaaggattcggggtggagatcagccatttgccctgattattgt
cctaacatgtatgaagaaatggaaacattagctaacgtgctccagtcagacattggtcag
gacatgcgtgttcataacagcacatttctgtggttcatcccttttgtgcagtccctcatg
gacctgaaggatctgggtgtggcttacatagtggaggttattcaccatctgtactctgaa
gtcaaagatgttctcaaccagacagacgctgtgtgtgacaaagtcactgagtttttcctt
ctgattttggtgtccgtgattgaactacatagaaataaaaaatgtctacatttgctgtgg
gttagttcccagcagtgggtggaggctgtggtgaagtgtgccaagcttccgaccacagcg
tttgcacggagttccgagaagtcatctggaaactgttccaaaggcacagcaatgatatca
tccctgtcactgcattcaatgccctccaactctgtgcagctggcttgtgtgcagctgatt
agaagtctcctgaaagaaggctatcagcttgggcagcagactctctgtaagcggttctgg
gataagctcaacttattcctgcgagggaatttatctttaggttggcagttgactagtcag
gaaacccatgagctacaaacttgtttaaagcaaattattaggaacataaaatttaaagta
cctcagtgtagcacttttgtggatctgaatcctgcatgtaagacacctcctgcatcttat
aaagaagaaagtgaacaaatagggaagaagtctgaaaaagatgcgcactgtctagaaaat
tccagcccaacatcttctaaagaaccaatgaaagctgatgcatatcaagtgcaagagagt
attttgagcaaagcaaataatgccatagaagagagtaaagagccatattatataaaagat
ttgaaactagaaggccacctctcagctgagtcatgtttgaagctgagtagtaaaaatctt
gcctgtgaaagagttcaaaatcaagttaaaataagtacagggaaatataagtctgtaaaa
gagaattcctcatgtaccccacagaatggtactttaagaaatggtccagaaaaagtattt
gacagaggaataataatatcaaggcgcttattgactgtttctagcacggattctctggaa
aaagtgtctgcctccaatgaggacttctctttaaaggaagatggtcttggcaaaagctca
aaagcaaaatctaagacacataaagatggagtctgtgctaagttgtcacatgtaataaaa
aagcaacacaggagaagtatcagtttagaggaaaacctgactgtatctagcattgagggt
ttctattcaaagaaagatataggaggtcagaaaggaggtggaaacatatgcaatccttct
ttagtccctaatggtattctggatgataaaaatggagaacaaaaatctcaaagctgttta
ctgctgagaaagaaagaagtaaagaaagaaaagttagatattttctctacccctgaaaac
agttgtcaaatacaggaatgtcatgttgataccaaagatttggtctcactcacagaaatg
accaataccttcatgacgaaagcatctccctttaaagagcctgtgactggacatgaatca
agagatatgaaaattagtaggagcattgatcagttttcttctcatttaagagaacaggac
tttagcagcagtccccagcctgacaccttaacagattctcaggtagacagagacctccac
aaattatctttaatagctcaagccagtgttactaagttcccatcagattcaactgaaaaa
agtttatcccagatacaaagaaaagtaaaagatgagaaaagatgtttcacagcaaaccaa
aatatcagggaaacctgctgtgaacaggttattattatttcagattccgatgacgatgaa
gatgaaagaattctgggtttgaagaaacaaatgaaagagataaaagcatgcattgagaaa
gaatgtccagagcaacatacttcaatagctaacacaaatgtggaacagaaggtattaata
aaggaagaaaatccagtgtcccttttggagtttgaggaatctgattctcagttttttgag
tttgagactccatgtgaagtgttttcagtttggcatgatcagaaaccagacaagaattca
gctcaagagaatgaaaaaaatccatgctcaactcatgtgagtgatagtacaaatgatttg
ggttatgagacagattatgtacctgaagaggtcattaaaaaagtagcagagaactttgaa
gagcgtacaaaaccacgtagtagtagtacttctgttgaggaattttgtgatattgaagta
aaacccaagagaagacgatatgaaaaacctatagctgaagatcctctaaggccttcttca
tcttctgtcaaaaacgaggaccagtctgatattcttaacaagggaaatgtgagtaaaaat
gattttaaaggtatagatgcaagatctacagttcccagttcaagtgttcagagaaacgct
gtggtttccccaaagaagtctcttccaaagcctcgcatgtattccaaacctgtcaggaaa
gttccagtggttaaagcttctaagaaatcccattcagataccaagaaagggcagagtaaa
agctcccattacataagctgtagaacaactcctgctattgttccgccaaagaaattccgc
cagtgtcccgaaccaacttcagtggttgagaaacttggcctgaaaaaggctcctcgtagg
gcatttgaattgtcccagggatcttcagagtgtttaagtcggctgcgtgaccatggcaga
actgttggagtagtggatacccggaaaaagacgaagttaatttctcctcggactctatct
gtcagaaataataagaaactgctgacgagtcaagaccttcagtttcaaaggcagatgaga
tccaaatcacagcaaaacagacaaaaacgttttgattgtcgaagtacagataagacacga
gcagggccacgtgctgcacagagctctgctgtgccagaatcaaataagtcagattacagt
catggaggagccgaggtgactgctaacaataagggaaaacagttactaacatgtcagtct
tctgaaacagaacccatgaaagcaggaaaacagttactaacatgtcagtcttctgaaaca
gaacctgtgaaagcaaaccagtgtaatcctgtcatggtaaatggaagaatagcaacaaat
gaagttattgttcctacctcagagaatctattagacagaggtgacctaacagttcatcat
ttagagttggcaactttgaaagaggaagagcctgaactcagcagtgacatagaggaagat
gatatattcttaacacagcgtgaccctgaagacatggatttatgttcacaaatcgagaga
gagaatgataaactcattgaagtcattcatggaaaagatacagtgcagggagaggaagag
tgtgtgagtcagcctcagttggaatctttaagtagcacaaaatgtaagtacaaagattgt
gttgaaactctgaaaaacctgggtgagtactgctcaaaacactcaaaaactaacgccaca
gatgaagatgtatttcgtaaacctggcttgcctctgtctgcatcaaaacgttcgagacct
tccacgaccaaggtttttagttcaagcagtacttcacggattgctggtctctccaagtct
ttggaaagtaccgcagccctcccatcatctctgaaaaataagtcaagtggggcacagtct
gttctgaaaggaccacagccacccctgaagccagtggctgaagtgaaaggtctatgcaat
gttttccctgctcagactccaaataactccaacaggcaagttttgaaagttccatttggg
gaaagcagaccttttttgacttcctctccagtaaacattctcacgtcgtcacagtccatc
tctgatacttttgtaaaagaggtcttgaaatggagatacgagatgtttgtgaactttgat
cagtgtgggcccccgtcgagtctgtgtcagtgcatcgcaagacgggtgcctatcaggttt
caagactgtggagattattttaatgtgtttttccctttgatggtactgaatacttttgaa
acagtggcacaggaatggatcagttctccaaacaaagagaaattccatcagttgcattta
cgaaaatttcctgatgattataaaaaatactgggagtttgtggtttatcttgaggaatgt
gagctagctaaacagcttcatccaagggaaaatgatttggtgtttttggttcctgaaaga
ctcaatgaggagaagaaagatttggagtggagtcacctggaagatgcctgtgaatattat
tgtggctatgttcataaattccgccgcacttcagtcatgcataatgggaaatttgagtgt
tcggtttccatccagactcaagataatttaccagtcaatttaaatgaactcgtgaaatgc
tttgtaatcagctctctggtgactacacaaaggaagttgaaagccatgtctttgctgagt
ggtcggaaccaactggccagagccattctgaatccaaaccccatggacttctgtacaaaa
gatttactaactgcaacatctgagagaattgttgcctacttaaaagatttcaatgacgac
cagaagaaagcgatagaaactgcatgtgccatggtgaaacactccccatcagttgccaag
atctgtctgattcatggaccacctggaacaggaaaatcaaaaaccattgttggcatccta
taccgcctgctgacagagaaccaaaggagggggtgttcagatgaaaactccaacgccaaa
atcaagcaaaaccgtgtcctcgtatgtgcaccttccaatgcagctgttgatgaacttatg
aaaaaaattatcattgaattcaaagaaaagtgtaaagacaagaagaatcctatgggaaac
tgtggagatataaatttagtacgtctaggtccagaaaagtctattaataatgaggtccta
agattcagtttggacagtcaagttaaccacagaatgaaaaaagacttaccgtctcatgtt
caggagatgcacaaaagaaaggaatttcttgatcgtcaacttgatgaactttcccgccag
cgtgctttatgccgaggtggaagggaatcgcagaggcaagaattagatggaaaaattgcc
agagtttcaaaagaaaggcaggagcttgcttctaaaattaaagaggttcaaggacgccca
cagaagacacagagcatcatcatcttagagtcacacatcatttgctgcacgctgagcacg
agtggtggcttgctgctcgagactgctttccgtgggcaagggggcgtccccttcagctgt
gtcatcgttgatgaggctggacagtcctgtgaagttgaaactcttactccgctcatccat
cgttgcaacaagcttgtcctcgtaggagaccctaagcagctccctcccacagtcatttcc
gtgaaggcacaggactacggctatgaccagtcgatgatggcccgcttccacaagttcctg
gaggagagtgtggagcacaacatgattggcaggctgcccgtcttacagctcaccatccag
tacaggatgcacccggacatatgcctctttccttctagttatatttatgatggaatcttg
agaacaaatagagggacagagaccagtcggtgctcatctgactggccatttcaaccctac
ctcgtgtttgacgttggagatggcttagaaagacgggataatgactcatatgtaaatgtt
caagagataaaactggtaatggaactaattaaacttattaaagacaaaagaagggacatt
actttccgaaacattggcataataacccattacaaggctcagaagacactgattcagaag
gatttggacaaagagtttgatagaaaaggggcagcagaagtcgataccgtggatgccttc
caggggcgtcagaaagactgtgttattgttacatgcgtcagagcaaatgccacacaaggc
tcaattggatttctggcaagtttgcagagattgaatgtcaccatcacacgagccaagtac
agcctcttcatcctcggacacttgagaaccctagtggaaaataggcattggtatcacctg
attcaagatgcacagaaacgtggtgccattattaagacttgtgacaagaactacagacac
gatgcaatgaagatcctgaagctcaaaccattgcttcagaggagccttactcatcctcct
gctgtcactccagaggcatccagaccccagggtggcctacccagcagcaagcaagatggt
gaactcagcaagacatcttttgcttcttccatataccactcaccctctgactccaaagaa
gccacagtcactgaggctgcaaaggatcctgaaaggccacccaatcaggactggcttcgg
gacccaagactgctgcggaggatgggcttggccttggatgcccaaggaataagcctcagg
gagctgcagcccttgagcccccagcattccggagcagcgcctccttcgggcgtgccaggt
tgccctgggagtccccaggagccaggcaccgtcaggcagcagggagtcaccctgaacagc
cacatgcctcgtatgccgtgtgactctccagctgccagtactgacacttccacaagcgca
aagaagtgtgaccaggaagagggggcgctcggccacaggagagaggccaggtccttgagt
gcaggggatcaggcgtggtgggcgagctcccacacaaagaggaactcagactgggatgag
agggtcctggaggaggacagctgctccaagaagagacgggttttatag
DBGET
integrated database retrieval system
