Bubalus kerabau (carabao): 129625583
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Entry
129625583 CDS
T11435
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03008
Ribosome biogenesis in eukaryotes
bke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129625583 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
129625583 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bke03021
]
129625583 (XRN2)
03019 Messenger RNA biogenesis [BR:
bke03019
]
129625583 (XRN2)
03009 Ribosome biogenesis [BR:
bke03009
]
129625583 (XRN2)
03016 Transfer RNA biogenesis [BR:
bke03016
]
129625583 (XRN2)
Transcription machinery [BR:
bke03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129625583 (XRN2)
Messenger RNA biogenesis [BR:
bke03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129625583 (XRN2)
Ribosome biogenesis [BR:
bke03009
]
Eukaryotic type
Pre-60S particles
RNases
129625583 (XRN2)
Transfer RNA biogenesis [BR:
bke03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129625583 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
129625583
NCBI-ProteinID:
XP_055400082
LinkDB
All DBs
Position
13:40891980..40954776
Genome browser
AA seq
952 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEGE
FIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPSFSPGGILTPHALGSRSSPGSQVASNPRQAAYEMRMQNNLSPSVSPNTSF
TSDGSPSPRGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYKTGSTELVDVPPELCHGIQG
KFSLDEEAVLPNQVVCSPIPVLKDLTHNAVISINFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDPAAFRALGHVMPRGSSGTGVYSNAAPPPP
AAFQGNMYRPLLRGQAQIPKLMSNVRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQ
TQNAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcctgtcgatgccagtaag
cctaaccccaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccac
ccctgtacgcatcctgaagacaaaccagcaccaaaaaacgaggatgaaatgatggttgcg
atctttgagtacattgacagactcttcagtattgtcagaccaagacggcttctctacatg
gcaatagatggagtggcaccgcgtgctaaaatgaaccagcaacgttcaaggaggttccga
gcatccaaagaaggcatggaagcagagatagagaagcagcgagtcagggaagagatactg
gcgaaaggtggctatcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggggaacataaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaacactcatcactgcttatgtggagcagatgctgatctcattatgcttggc
cttgctacacatgagcccaactttaccattatcagagaagaattcaaaccaaacaaaccc
aaaccctgtggtctttgtaatcaatttggacatgatgtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcacgatgaactggcagacagccttccttgtgcagaaggagag
tttatcttcattcgtctcagcgttctccgtgagtatttggaaagagagctcaccatggcc
agcctgccgttcacatttgatgtcgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaacgacttccttcctcacctgccatccttagagattagggaaggtgccatc
gaccgcttggttaacatatacaaaaatgtggtacacaaaaccgggggttaccttacagaa
agtggttatgtcaatctgcagagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaaaagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccatctttctctcctggtggaatattaacccct
catgcccttggttcaagaagctcaccaggatctcaagtggccagtaatccaagacaagcg
gcttatgaaatgaggatgcagaataacttgagtccttcagtctctcctaatacaagtttc
acttctgacggctccccatctccgagaggaggaattaaacgaaaagcggaagacagtgac
agtgaacctgagccagaggataacgtcaggttatgggaagctggttggaaacagcgatac
tacaagaacaaatttgatgttgatgcagcagatgagaaattcagacgtaaagtcgttcag
tcttacgttgaaggactctgctgggttctacgatattattaccagggctgtgcatcctgg
aagtggtattatccattccattatgcaccattcgcttcagactttgaagggattgcagac
atgccttctgattttgagaagggtaccaaaccgtttaaaccactggaacaacttatgggg
gtttttccagctgctagtggtaactttctacctccatcatggcggaagctcatgagtgat
ccagattctagtataattgacttctaccctgaagattttgctattgatttgaatgggaag
aggtatgcatggcaaggtgtggccctgttgccatttgtggacgagcggagactgcgtgct
gccctggaagaggtgtacccagacctcacccctgaagagaccagaagaaacagtcttgga
ggcgatgtcttatttgttgggaaacatcacccactgcatgacttcattttagagctgtac
aagacaggttccacagagttagtggatgtaccacctgaactgtgtcatgggatccaaggg
aagttttctttggatgaggaagctgttcttccaaatcaagtagtatgttctcctattcct
gtgttaaaggatctgacacacaatgctgtgatcagtatcaattttaaagacccacagttt
gctgaagattacatttttaaagctgtcatgcttccgggagcaagaaaacccgcaccggtc
ctgaaacctagtgactgggagaaatccagcaacggacggcagtggaagccccagcttggc
tttaaccgggaccggcggcctgtccacctggatcccgcagccttcagggctttgggccac
gttatgccgagaggctcgtccggaactggcgtctacagcaatgctgcaccaccaccacct
gcagctttccaggggaacatgtaccggccacttctgcgaggacaagcccagattccaaag
ctcatgtcaaatgtgaggccccaggactcctggcgaggtccccctccccttttccagcag
caaagattcgacagaggtgttggggccgaacctctgctaccatggaaccggatgctccaa
acccaaaatgcagccttccagccaaaccagtaccagatgctggctgggccaggcgggtat
ccacccagacgtgacgatcgtggagggagacagggatatcccagagaaggaaggaaatac
cctttgccaccaccctcaggaagatacagttggaattag
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