Bubalus kerabau (carabao): 129630793
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Entry
129630793 CDS
T11435
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03030
DNA replication
bke03410
Base excision repair
bke03420
Nucleotide excision repair
bke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129630793 (LIG1)
03410 Base excision repair
129630793 (LIG1)
03420 Nucleotide excision repair
129630793 (LIG1)
03430 Mismatch repair
129630793 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bke03032
]
129630793 (LIG1)
03400 DNA repair and recombination proteins [BR:
bke03400
]
129630793 (LIG1)
Enzymes [BR:
bke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129630793 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129630793 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129630793 (LIG1)
DNA replication proteins [BR:
bke03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129630793 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129630793 (LIG1)
DNA repair and recombination proteins [BR:
bke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129630793 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129630793 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129630793 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
129630793
NCBI-ProteinID:
XP_055407248
LinkDB
All DBs
Position
17:complement(58269838..58297283)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKKEFQKKKNFNGARSQMFLILLVAQDEEQEVTSGISNPEFFYHLDEKGQLRDVEKLEGS
SRDGRRERLEMMPRDSSLYAAAKSLQSCLTLCDPIDGSPLGSAVPGILQKLVTRGEEEWG
ENSDTVMQRSIMSFFQPKKEGKAKKPEKETSKSIRETESPPKVALKERNRVVSEGDSPVK
RPGRKATRVLGSEGEEEEEEAPTTPRSQKPASDSPQASPPSPVTLPESSPSRSKPSPAVA
SPSGIPKRRTARKQLPKRTFQDVLKEQGEDEDPETKKKKEEEEAETPTESLPEPEGGDKE
EVESGDQPTTPPEPQKTSTESPTESVSEPGVTVKQEPQENDQAQPPPKTPKTLSSFFSPR
KPAVKKEAKEEGLGALRKDETKGHLDPPSYNPAKNSYHPIEDACWKAGQRVPYLAVARAF
EKIEEVSARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLK
AVAQATGRQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFTKFRDIAQLAG
SASTTKKIDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEC
PPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSP
GVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTG
RYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVC
LYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVK
DSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYG
GFLLASYDEESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWL
DPSDVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGL
YKKQSQIQNQQGAEPDSEQEEFY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaatttcaaaaaaaaaagaatttcaatggagcaaggagtcagatgtttcta
atcctgctggtggcccaagatgaggaacaggaggtgacttccggaattagcaacccagag
ttcttctatcaccttgatgagaagggccagctgagggatgtggagaaacttgaaggttca
agcagggatgggaggagagagagactggagatgatgccacgggacagttctttgtatgct
gctgctaagtcacttcagtcgtgtctgactctgtgcgaccccatagatggcagcccacta
ggctccgccgtccctgggattctccagaaactggtgaccagaggagaggaggagtgggga
gagaattctgataccgtcatgcagcgaagtatcatgtcatttttccagcccaagaaagag
ggcaaagcaaagaagccagagaaggagacatccaagagcatcagagaaacggagtcccct
ccgaaggtggcgctgaaggagcggaatcgagtggtgtctgagggtgactctccagtgaag
aggccggggaggaaggcgacccgggtcctgggcagcgagggcgaggaggaggaagaggaa
gcccccaccacccccagaagccagaagcctgcttcagactctccacaggcctcgcctccc
agtcctgtcacactgcctgagagcagcccttcccgctccaaaccctccccagcggttgca
tccccatcagggatcccaaagcgtcgcacggcccggaagcagcttcccaaacggacattt
caggatgtcctgaaagagcagggcgaggacgaggacccagaaactaagaagaagaaggag
gaagaagaagcggagacaccaacagaaagcctcccagagcctgaagggggcgacaaggag
gaagtggaaagcggggaccagcccacgacgccccctgagccccagaagacctccacagag
tccccgacagaaagcgtttcagagcccggggtgacggtgaagcaggaaccacaggagaat
gaccaggctcaaccaccccccaaaactccaaagaccctcagcagtttcttctccccccgg
aagccagctgtcaaaaaagaagcgaaagaagaaggacttggtgctctgagaaaggacgag
accaagggacacctggacccaccgagctacaatcctgccaagaacagctaccaccccatc
gaagatgcctgctggaaggcgggccagagggttccttatctggctgtggcccgggcgttc
gagaagatcgaggaggtctctgctcggctccggatggtggagacgctgagcaacctgctg
cgctccgtggtggccctgtcacctgctgacctcctgcccgtcctctacctgagcctcaac
cgcctggggccgccccagcagggcctggagctcggcatcggagagggcatcctcctcaag
gcagtggcccaggccacgggtcggcagctggagtccgtccgggccgaggtggccgagaag
ggtgatgtggggctggtggccgagagcagccgcagcacccagaggcttgtgctgcccccg
cccgcgctcactgccgccggcgtcttcaccaagttccgggacatcgcgcagctggcaggc
agcgcttccacaaccaagaagatcgatgtcatcaaaggcctctttgtggcttgccgtcac
tcagaggcacgtttcattgccagagccctgagtggacggctgcgccttgggctggctgag
cagtcagtgctggctgccctcgcccaggctgtgagcctcacaccgcccggtcaagaatgc
ccccccgccgtggtggacgccgggaagggcaagacggcagaagccagaaagacgtggctg
gaggagcaaggcatgatcctgaagcagactttctgtgaggtacctgacctggaccggatt
gtccctgtgcttctggaacatggcctggagcggctcccagagcactgcagactgagccca
ggggttcccctgaaaccaatgttggcccaccccacccggggcgtcagtgaggtcctgaag
cgctttgaggaggcagctttcacctgcgagtacaaatacgacgggcagagggcacagatc
cacgttctggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaatactgga
aggtaccccgacattatcagccgcatccctaagattaaactcccatcggtcacatccttc
atcctagacacagaagctgtagcttgggaccgggaaaagaagcagatccagccattccaa
gtgctcaccacccgcaaacgcaaggaggtggacgcggcggagatccaggtgcaggtgtgt
ctgtatgccttcgatctcatctacctcaacggagagtccctggtacgtgagcccctctcc
cgacgccggcagctgctccgggagaacttcgtggagacggagggcgagttcgtctttgcc
acctccctggacaccaaggacacggagcagattgccgagttcctggagcagtcagtgaaa
gactcctgcgaggggctgatggtgaagaccctggacgtggacgccacctacgagatcgcc
aagaggtcacacaactggctcaagctgaagaaggactacctcgagggtgtgggcgacacc
ctggacctcgtagtgattggtgcctacctgggcaaggggaaacgggccggccggtacggg
ggcttcctgctggcctcgtacgacgaggagagcgaggagttccaggccatctgcaagctc
ggaactggcttcagtgacgaggagctggaagagcaccaccagaggctccaggccttagtg
ctgcccaccccacgctcctacgtccgggccgatggcgcggtggcccccgaccactggctg
gaccccagcgacgtgtgggaggtgaagtgcgcggacctctccctgtcccccatctaccct
gcggcccggggcctggtggacagcgagaaggggatctccctccgcttccctcggtttatt
cgtgtccgtgaggacaagaagccggagcaggccactaccagtgcccaggtggccggtctg
tacaagaagcagagtcagattcagaaccagcagggtgcggagccggactccgagcaggaa
gagttctactag
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