Bubalus kerabau (carabao): 129635330
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Entry
129635330 CDS
T11435
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
bke Bubalus kerabau (carabao)
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bke04121
]
129635330 (PDZRN3)
Enzymes [BR:
bke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129635330 (PDZRN3)
Ubiquitin system [BR:
bke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
129635330 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
Sina_ZnF
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
CEP104_ZnF
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
129635330
NCBI-ProteinID:
XP_055414212
LinkDB
All DBs
Position
20:29795276..30067246
Genome browser
AA seq
1060 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGQVVKLQQLPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNAALQARLGAL
HKAFKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKDGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQMVDMGTQT
DITFEHIMALSKMSSPTPPVLDPYLLPEEHPSAHEYYDPNDYIAGIHQEMDREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWLDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGMGRTDESTRNDESSEQENNGDDAPAASPPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCADADYLGIPVDECERFRELLELKCQVKSAG
PYGLYYPGSTLDASKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQFREPWM
LHNSGFRNYNTSVDVRRRELADITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLR
RAAEGEGAAEAYGPSPKNLLSITEDSEGGSPNYSPSPKELDPSPAPENKERKPCEEGGSS
GSPTPSAKLGGSYLPPFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDLNSANQSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDDAVSE
LKMGRYWSKEERKQHVVKAKEQRRRREFMMQSRLDCLKEQQGADDRKEMNILELSHKKMM
KKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgacggcgacgtggacccggacctgaagtgcgctctg
tgccacaaggtcctggaggacccgctgaccacgccgtgcggccacgtcttctgcgccggc
tgtgtgctgccctgggtggtacaggagggcagctgcccggcgcgctgccgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgctcaagcgcctcatcctcaagctggacatc
aagtgcgcgcacgcggcgcgcggctgtggccaggtggtcaagctacaacagctgcccgag
cacctcgagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgctgaggcgagacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggccggtgggc
cgctgccaggagggctgcgggctgcccctgacgcacggcgagcagcgcgccggaggccac
tgctgtgcgcgggccctacgggcgcacaacgccgcgctgcaggcccgcctgggcgcgctg
cacaaggcgttcaagaaggaggcgctgcgagccggcaagcgcgagaagtccctggtggcg
cagctggccgccgcacagctggagctgcagatgaccgccctgcgctaccagaagaagttc
accgagtacagcgcgcgccttgactcgcttagccgctgcgtggccgcgccgcccggcggc
aagggtgaagaaacaaaaagcctgactcttgtcctgcatcgggactctggctccttggga
ttcaacatcattggtggccggccgtgtgtggacaaccaagatggatcgtccagtgaagga
atctttgtatccaaaatagttgacagcgggcccgcagccaaggacggaggcctgcaaatt
cacgacaggattattgaggtcaatggcaaagacttatccagagcaactcatgaccaggct
gtggaagccttcaagacagccaaggaacctatcgtggtccaggtgttgaggagaacaccg
cggaccaaaatgttcactcctccgtcagagtcacagatggtggacatgggaacacagaca
gacatcacctttgagcacatcatggcccttagcaagatgtcctcgcccaccccacctgta
ctggatccctatctcttgccagaggagcatccctcagcccatgagtactatgatccaaat
gactacatcgcaggcatccatcaggagatggacagggaggagctggagctagaggaagtg
gatctctacagaatgaacagccaggacaagctgggcctcacggtgtgctaccggacagat
gatgaagatgacattggcatctatataagcgagattgaccctaacagcatcgcggccaag
gatgggcgcatccgagaaggagaccgcattatccagattaatgggatagaggtacagaac
cgtgaagaggctgtagctctgctaaccagtgaagaaaacaagaacttctcattgctaatt
gccaggcccgaactccagctggacgagggctggctggatgacgaccggaacgactttctg
gatgacctgcacatggacatgctggaggagcagcaccaccaggccatgcagttcacggcc
agcgtcctgcagcagaagaagcacgaggaagacgggggaaccacagacacggccaccatc
ctgtccaaccagcacgagaaagacagcggcatgggccggacggacgagagcacacgcaat
gacgagagctcggagcaggagaacaacggcgacgatgcccccgcggcctccccgccgctg
gctgggcagaggaagctcacttgcagccaggacaccctgggcagcggcgacctgcccttc
agcaacgagtccttcatttcggccgactgcgccgacgccgactacctgggcatccctgtg
gacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagcgccggc
ccctatggcctctactaccctggcagcaccctggacgccagcaagagcgaccccgagagc
gtggacaaggagctagagctgctcaacgaggagctgcgcagcatcgagctggagtgtctc
agcatcgtgcgcgcgcacaagatgcagcagctcaaggagcagttccgcgagccctggatg
cttcacaacagcggcttccgcaactacaacaccagcgtggacgtgcgcaggcgcgagctc
gccgacatcaccgagctgcccgagaagtccgacaaagacagctcgagtgcctacaacacc
ggcgagagctgccgcagcaccccactcaccttggagatgtcccccgacaactccctgcgg
agggcggccgagggagaaggtgccgcggaagcttacgggccgtcccccaagaacctgctc
tccatcacggaagattccgaggggggctccccgaactacagcccttcccctaaagagctg
gatcccagcccggctccggagaacaaggagaggaagccctgcgaagaaggtggcagcagc
gggagccccacccccagcgcgaagctgggaggctcgtacctgccgcccttcccgcactcg
ccctacaagcacgcccacatccccgcgcacgcacagcactaccagagctacatgcagctg
atccagcagaagtcggccgtcgagtacgcgcagagccagatgagcctggtgagcatgtgc
aaggacctgaactcagccaaccagtcagagccgaggatggagtggaaggtgaagatccgc
agcgacggcacgcgctacatcaccaagcgcccggtgcgggatcgcctgttgcgggagcgc
gcgctcaagatccgagaagagcgcagcggcatgaccacggacgacgacgcggtgagcgag
ctgaagatggggcgctactggagcaaggaggagaggaagcagcacgtggtgaaggccaag
gagcagaggcggcggcgcgagttcatgatgcagagccggctcgattgcctgaaggagcag
cagggggccgacgacaggaaggagatgaatatcctcgaactcagccacaaaaagatgatg
aagaagaggaataaaaagatatttgataactggatgacaatccaagaactcttaacccac
ggcgcaaaatcgccagacggcactagagtatacaattcattcctctcggtgactactgta
taa
DBGET
integrated database retrieval system
