Bubalus kerabau (carabao): 129640227
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Entry
129640227 CDS
T11435
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
bke Bubalus kerabau (carabao)
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bke03021
]
129640227 (CHD1)
03036 Chromosome and associated proteins [BR:
bke03036
]
129640227 (CHD1)
Transcription machinery [BR:
bke03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129640227 (CHD1)
Chromosome and associated proteins [BR:
bke03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
129640227 (CHD1)
SLIK complex
129640227 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
129640227
NCBI-ProteinID:
XP_055421412
LinkDB
All DBs
Position
1:complement(267729890..267802691)
Genome browser
AA seq
1799 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDNSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHQASSNSGS
EEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDY
EPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEEDDEEEYDNDKRSSRRQATVNVS
YKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADG
DPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSEC
SWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLEL
RDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLST
LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA
FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSAL
QKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE
LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKV
ANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQIS
FNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPT
FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNL
LIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKE
AQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSDKSDEDDDKDEITSVKHPN
KKIKTERDSEEKTEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKR
ENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLDAPVHITASGEPVPIAEESEELDQ
KTFSICKERMRPVKAALKQLDRPERGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQI
KQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSSLNTQVIRNPDVERLK
ENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHY
KQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTH
HKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSIEHKSTPEHTWSSRKT
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttccggctctggatctggttcgagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagcgactcagactctggatccgaatcgggcagt
cagtcagagtctgagtcagacaattcccgagacaataaagttcaagcaaaaccaccgaaa
gttgatggagctgagttctggaaatctagccctagtattttggccgttcagagatctgca
atgcttaagaagcagcagcagcagcagcagcaacatcaagcttcatctaatagtggatca
gaggaggattcctctagcagtgaagattccgatgactcatccagtgaggtcaaaaggaaa
aagcataaagatgaagattggcagatgtctggatcgggatcgccctctcagtctggttcg
gattcagaatctgaagaagaaagagataaaagcagttgtgatgaaacagaatcagattat
gagccaaaaaataaagttaaaagtagaaaacctcaaaatagatctaagtcaaaaaatgga
aaaaagattattggacaaaaaaagagacagattgattcatctgaggaggaggaggatgat
gaagaagaatatgataatgataaaagaagctctcgtcgccaagcaactgtcaatgttagc
tataaggaagatgaggaaatgaaaacagattctgatgacctcctggaagtctgtggagag
gatgttcctcaacctgaggaagaggaatttgaaacaatagaacggtttatggattgtcgg
attggaagaaaaggagctactggtgctactacaaccatctatgcagttgaagcagatggt
gacccgaatgcaggatttgaaaaaaacaaggaaccaggagagatccagtatttaattaaa
tggaaaggatggtcacatatccataatacttgggagacagaggaaacccttaagcagcaa
aatgttagaggaatgaaaaaattagataattataagaaaaaagatcaggaaacaaaaaga
tggttgaaaaatgcttctccagaagatgtggaatattataattgtcagcaagaacttaca
gatgatctccataagcagtatcaaatagtggagcgaataattgctcactccaatcagaag
tcagctgctggctatcctgattattattgcaaatggcagggtcttccatactcagaatgc
agctgggaagatggcgctcttatttccaaaaagtttcaagcatgcatagatgagtatttc
agcaggaatcaatcaaaaaccactccttttaaagactgcaaagtattaaaacaaaggcca
agatttgtagccctaaagaaacagccatcctatattggaggacatgaaggattagaatta
agagattatcaactgaatggtttaaattggcttgctcactcttggtgcaaaggtaatagt
tgcatacttgctgatgaaatgggccttggaaaaacaatacagacgatctcatttctgaac
tatttgtttcatgaacaccaattatatggaccttttctgttagtagtaccactctccact
ctcacttcctggcaaagggagattcagacatgggcttctcaaatgaacgctgtggtttat
ttaggtgacatcaacagcagaaacatgataagaactcatgaatggatgcatccccagacc
aaacggttaaaatttaatatactgttaacaacttatgaaatcttgttgaaggataaggca
ttccttggaggtctgaattgggcatttataggtgtggacgaagcacatcgattaaagaat
gatgactctcttctgtataaaactttaatagattttaagtccaatcaccgtctccttatc
actggaactcctctgcaaaactccctgaaagagctctggtctttgctgcatttcattatg
ccagaaaagttttcttcctgggaagattttgaagaagaacatggcaaaggcagagaatat
ggttatgcaagcctccacaaggagcttgagccgtttctattgcggagggttaagaaagat
gtggaaaaatctcttcctgccaaggttgaacagattttaagaatggaaatgagtgcttta
cagaaacaatattacaagtggatattaactaggaattacaaagccctcagcaaaggttcc
aagggcagtacctcaggctttttgaatattatgatggagctaaagaaatgttgtaaccat
tgctacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaa
cacttaatccgtagtagcggaaaactaattcttcttgacaaactgttaattcgcctaaga
gagcgaggcaatagagttcttattttttctcaaatggtgcggatgttagatatacttgca
gaatatttgaagtatcgtcagtttccctttcaaagattagatggatcaatcaaaggggag
ctgaggaaacaagctctagatcattttaatgctgaaggatcagaggatttctgctttttg
ctttccacaagagctggaggtttaggaattaacttagcctcagctgacactgttgttata
tttgattctgattggaatccacaaaatgatcttcaggcacaggctagagctcatcgaatt
gggcaaaagaaacaggtgaatatttatcgtctggttacaaagggatcagttgaagaggat
attcttgaaagggccaaaaagaagatggttttagatcatcttgtgattcaaagaatggac
acaactgggaagacagtactacacacaggttctgccccttcaagttctactcctttcaat
aaagaagaattatcagccattttaaagtttggtgctgaggaactttttaaggagcctgaa
ggagaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaaact
catgaaaatgaagccggacctttaactgtaggagatgaattactttctcagttcaaggtg
gccaacttttcaaatatggatgaggatgatattgagttggagcctgaaagaaattcaaag
aactgggaagaaatcattcctgaagatcaaagacgacgattagaagaagaggaaagacaa
aaggaacttgaagaaatttatatgctccccagaatgagaaactgtgcaaaacagattagt
ttcaatggaagtgaagggaggcgcagtagaagtaggagatactctggatctgatagtgat
tcaatatcagaaagaaaaaggccaaagaaacgtggaagaccacgaactatccctcgggaa
aatattaaaggatttagtgatgcagaaattcggcggtttatcaagagttacaagaaattt
ggtggccctctggaaagattagatgcaattgctcgagatgctgaattagttgataagtca
gagacagacctcagacgactaggagaattggtgcataatggttgcattaaagctttaaag
gacaactcttcaggaacagaacgaacaggtggtagacttggaaaagtaaagggcccaaca
ttccgaatatcaggtgtacaggtgaatgccaagctggtcatctcccatgaagaagaatta
ataccgctgcacaaatccattccttcagatccagaagaaagaaagcagtatatcatccca
tgccacacgaaggcagctcattttgatatagactggggcaaagaagatgattccaatttg
ttaattggtatctacgaatatggatatggaagctgggaaatgattaaaatggatcctgac
ctcagtctgacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacaa
ttacagacacgtgcagactacctcatcaaattacttagtagagatcttgcaaaaaaagaa
gctcagaggctttctggtgcaggaggttcaaaaaggcgaaaagcaagagctaagaagaat
aaagcaatgaagtctataaaagtgaaagaggaaataaagagtgattcttctcccttgccc
tcagacaagtctgatgaagatgatgataaggatgaaatcacttctgtgaaacatccaaac
aaaaaaattaaaacagaaagagacagtgaagaaaaaactgagccagatgtttgtataaag
aaggaaccagaagaaaagagggaagcaaaagaaaaggaaaataaaagagaacttaaaagg
gagataaaagaaaaagaggataagaaagatataaaggaaaaagattttaaagagaaaaga
gaaaacaaagtaaaagaagctatacagaaagaaaaagacataaaagaagaaaagctgagt
gaatccaagtctgaaagcaaggaaagatctaagaaatcttcagtgttggatgctccagtt
cacatcaccgcaagtggtgaaccagtgcccatagcggaagaatctgaagagctggatcag
aagacattcagcatttgtaaagagaggatgaggcctgtcaaagcagcattgaagcagctt
gataggcctgagagaggcctttcggaaagagaacaactggaacatactagacagtgcttg
ataaaaatcggagaccatatcacagaatgtctgaaagagtatacaaatcctgaacaaatc
aagcagtggagaaaaaacctgtggatttttgtatctaagtttactgagttcgatgcaaga
aaattacataaattatataagcatgctattaaaaaacggcaggaatcccaacagaataat
gaccagaacagcagcttgaatacacaagtgattagaaatccagatgtagaaagattaaaa
gagaatacaaatcatgatgacagcagcagggacagttattcgtctgatagacacttatct
caatatcatgatcatcataaagaccgacatcagggagattcgtacaagaaaagtgactct
aggaagagaccttattcttcttttagtaatggtaaagatcatcgtgattgggatcactac
aagcaagacagcagatattacagtgatagagagaaacacagaaaactggatgatcacagg
agtagagaccacagatcaaatctggaaggaagtttaaaagacagaactcattctgatcat
cgttctcattcagatcatcggttacattcagaccatcgatcaagttctgaatatacacac
cataaatcttccagggattataggtatcactcagattggcagatggaccatagagcttcc
agtagtggtcccagatctccactagaccagaggtctccttatggctccagatctccattt
gaacactcaattgaacacaaaagtacacctgagcatacctggagtagtcggaaaacataa
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integrated database retrieval system
