Bubalus kerabau (carabao): 129644281
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Entry
129644281 CDS
T11435
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bke Bubalus kerabau (carabao)
Pathway
bke04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
129644281 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bke04147
]
129644281 (COL18A1)
00535 Proteoglycans [BR:
bke00535
]
129644281 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bke00536
]
129644281 (COL18A1)
Exosome [BR:
bke04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129644281 (COL18A1)
Proteoglycans [BR:
bke00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129644281 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129644281 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
129644281
NCBI-ProteinID:
XP_055425809
LinkDB
All DBs
Position
2:191556577..191652931
Genome browser
AA seq
1793 aa
AA seq
DB search
MAPDPSSGRGHHGLLLLACCLSAAQADLFSWIWPRNSAWPIAAPASKPPGSSPVWPTEDT
TTHVAPRDAPTDWWKVSASPTAPLGRPEVGQGQSPTGPTASTVSLDPKEENIAGVGAKIL
NVAQGIRSFVQLWDNAKDTTPAESSARAGTLAPETPTDPLSTAPGEGSTRAETPPPTDTM
DALSTPGPSITPQDSGTTLQLSTTALSSPDTQRTEAGTLPVPTQLPPSPGRPWFRESLVS
PTPGRFSLSSVPARAPPRGSQLPLGRPLQLDGEGLLLAAARPGQQHADDRRPTPPLPPLV
TGSLGRHTALWALSSDPPAKLSHVAVSALTVDSGAWAPHVANSAGPRLANKSTLLGAAEL
AATEQPVPTTAGRCLPLPPSLALCGHLGIRRSWWPNHLHHTSREEVQAAVPAWGALLRTH
CHRFLAWFFCLLLAPPCGPGLPPGLPPCRQFCEALEDACWSRLDGRGLPLPCASLPARED
GHCVFIGPPADAEVVEVGLQQLLGEPPPWQVAVVHDPDVGPAYEFGEDGSGGGQAARRLL
PGAFFQDFSLLVRVRPASARAGVLFAVTDPAQAVVSVGVKLTAARGGRQDVQLLYTEPGA
THTRTAASFELPALDGRWTRLALSVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLF
VAQAGGADPEKFQGLISELRLHRDPQVSPRQCQDEDEDDDDDGASGDLGSGLVETQEHLQ
EELGASLGPSLPEAPPVTSPPLAGVVNEEDLRTEEVEESTTASSLGAQTLPSLGTAGTWD
ESVWSPGSSVKERGLKGQKGEPGAQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPQG
PPGKDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGP
PGPPGPSFKPDRLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSS
DVPGPAGLPGVPGRDGPPGRPGPPGPPGTPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDP
GPIGAPGEHGLAGAPGPAGPPGPPGPPGPPGPGFAAGFDDMEGSGSPLWSTARGADGLQG
PPGTPGVKGDPGAVGPPGSKGEVGADGTPGLPGLPGREGAAGPQGPKGEKGTQGEKGDPG
KDGVGQPGLPGPPGPPGPVVYVSEQDRVLASVPGPEGRAGFAGFPGPAGPKGDLGAKGQQ
GIPGPKGEKGEPGTFFAPDGRALTPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGR
PGMNGLKGEKGEPGDASVGFGMRGPAGPPGPPGPPGPPGTPLYDSNAFVDSGRPGPPGLP
GHQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGAAGQKGERGEPGGGGFF
GSGVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPP
SFPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGGSTGLGFQQVRVWATYQMLVDQVTQVP
EGWLIYVADREELYVRVRNGFRKVLLEAHVPLPHGTDNEVAVLQPPLVQLHEGNPYPRRE
VPHPTARSWRADDILASPPRLPHPQPYPGAPHHGAYAHLRPVPPTASPSHTHHDFQPVLH
LVALNSPQSGGLRGIRGADFQCFQQARAAGLTGTFRAFLSSRLQDLYSIVRRADRATLPV
VNLRDEVLFPSWEALFSGSEGQLKPSARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLT
ESYCETWRTDSRAATGQASSLLAGRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagcggccgcggccaccacggcctcctgctgcttgcctgctgc
ctctcggccgcccaggctgacctgttctcctggatatggcccaggaacagtgcctggccc
atagccgcaccagcctccaagcccccgggcagctcacctgtgtggcccacggaggatacc
accacgcacgtggccccccgggatgctcccactgactggtggaaagtctctgccagcccc
acagcccctctggggaggccggaggtggggcagggccagagccccactggccccacggcc
tccactgtgagcctggacccgaaggaggaaaatatcgccggcgtcggagccaagatcctg
aatgtggctcagggcatccggagcttcgtccagctgtgggacaacgctaaggacaccacc
cctgccgagagctctgccagggcagggacactggcccctgagacccccacagaccccctt
tctacggccccgggcgagggctccaccagggcagagacgccgccccccacggacaccatg
gacgccctctccacccctggaccctccatcaccccccaggacagtgggaccaccctccag
ctgagcaccacggccctgagctctccagacacccagaggaccgaggccggcaccctgcca
gtgcccacccagctgccaccctcccccggcagaccctggttcagggagtccttggtatcg
ccgaccccaggtagattttctctttcctccgtgccggcccgggcgcctccccggggaagc
cagctgcctctcgggcggcccctgcagctggacggtgaaggactcttgcttgcagcagcc
cgtcccggccagcagcacgctgacgaccgcaggcccacgccgcctctacctcccctggtg
acgggttccctgggcaggcacactgccctctgggctctctcctctgacccccctgccaaa
ctgtctcatgtcgcagtctcagctctaactgtagacagtggtgcttgggctccccacgtg
gctaattctgcggggcctcgtcttgctaacaagtccacactgctcggggctgctgagctg
gctgccaccgagcagcctgtccccaccaccgctggccgctgcctgcccctgccgccctcc
ctggctctctgcggccacctgggcatcagacgctcctggtggcccaaccacctccaccac
acaagtcgggaggaggtgcaggccgcggtcccagcctggggggcactgctccggacccac
tgccaccgcttcctggcctggttcttctgcctgctactggcacccccctgcgggcccggc
ctgccgcccggcctgccaccctgtcgccagttctgcgaggccctggaggacgcatgctgg
agccgcctggatgggcgcgggctgccacttccctgcgcctcgctcccggcccgcgaggac
gggcactgcgtgttcatagggccaccggcagacgccgaggtcgtggaggtagggctccag
cagctgctcggggagcccccgccgtggcaggtggccgtggtgcacgaccccgacgtgggg
cccgcctatgagttcggcgaggacggcagcggtggaggccaggcggcccggagactcctg
cccggcgcgttcttccaggacttctcgctgcttgtgcgtgtgcggccggcctcggcgcgc
gcgggcgtgctctttgcggtcacagacccggcgcaggcggtggtctcggtgggcgtgaag
ctgacggcggcgcgtggggggcggcaggacgtgcagctgctgtacacggagcccggagcc
acccacacgcgcacagccgccagcttcgagctgcccgcgctggatggtcgctggacgcgc
ctggcgctcagcgtggatggtgcctatgccaggctcttcgtggactgtaaggaggtccag
ggccagcccctggcgcactcgctgcacgacctgcagctggagcccgacgcccgactcttc
gtggcccaggccggtggagcggaccctgaaaagttccagggtctgatctcagagctgagg
ttgcacagggatcctcaggtgagcccccggcagtgccaggacgaggacgaggacgacgat
gatgatggggcatctggagacctgggcagcgggcttgtggagacccaggagcatctccag
gaggagttgggcgcgtcccttgggcccagcctccccgaggctcctccagtcacttctcca
cccttggctggagtcgtcaacgaggaggacttgagaactgaggaagtagaggagtcaacc
acggcgtcttcattaggagctcagaccctccccagcttgggcacagctggcacgtgggat
gagagtgtttggagccctgggagcagcgtgaaagagcgaggcctgaaggggcagaaggga
gagcctggcgctcagggcccccctggccccattggcccccagggtcctgcaggcccagcc
atagacagccatgaggcacagcctgtttccggaccacagggaccccctgggccccaggga
cccccggggaaggacggcacccctggaagggacggtgagcctggtgatcctggtgaagac
gggaagcccggggacactgggccacagggcttcccagggaccccaggagatgtgggcccc
aagggcgagaagggggatcctggagtcggaccgaggggacccccaggaccccaggggcct
ccggggcccccagggccctccttcaaacccgacaggctgaccttcatcgacatggaggga
tccggttttggcggtgacctggagagcctccgcggccctcgcggcttccccggccccccg
gggccccctggcgtcccaggcctgccaggagagccaggccgcttcgggatgaacagctcg
gacgtccctggacccgcaggcctgcccggcgtgcctgggagggacgggccgcctgggcgt
ccggggcccccgggacccccaggtactccaggaaaagacggacaaccaggactgactgga
cagaaaggcagcctcggtgaggcaggcgccccaggacccaagggaagcaagggagaccct
ggccccatcggcgctcctggagagcatggcctggcaggagcccccggacccgcaggccca
ccagggccccctggccccccggggcccccaggcccaggattcgccgcagggtttgatgac
atggaaggctccgggagccccttatggtcaacagcccgaggtgccgatgggctgcaggga
ccacccggcacgcccggagtcaagggggatcctggagctgtggggccaccagggagcaag
ggagaagttggagcagacggaacaccgggcctccctggcctcccgggcagagagggtgca
gctggaccccagggaccaaaaggagaaaaagggactcagggagagaaaggagacccaggg
aaggatggagtggggcagccaggactcccgggaccccccggacccccagggcctgtcgtc
tacgtgtcggagcaggatagagtgctggcgagcgtgccaggccccgagggccgtgcgggc
ttcgctggcttccccggaccagccgggccaaagggagacctgggcgccaaaggccagcag
ggcatcccgggacccaagggtgagaagggagagccgggcacgttcttcgcccccgatggc
agagcactgacccccgcccagaaaggagccaagggtgagcctggcttccgaggacccccg
ggtccgtacgggcggcccgggcacaagggagagatcggattccctggacggccggggcgt
cccgggatgaatgggctgaaaggggagaagggggagccgggggacgccagcgtgggattc
ggcatgaggggtccagctggcccacctgggcctccggggcccccaggccctcccgggact
cctctctatgacagcaacgcatttgtggactctggccgccctggacccccgggattgcca
gggcaccaggggccttctggacccaagggtgacaaaggagatgtgggcccccccggacca
ccagggcagttcccatttgacctcctccagctgggtgctgagatgaagggagagaagggg
gaccgaggggccgctgggcagaaaggagaaaggggtgagcccgggggcggaggattcttc
ggctccggtgtgcctggcccccccggcccgcccggctacccagggattccgggccccaag
ggagagagcatccgcggccagcctggccctccgggacctcagggaccccctggcattggc
tacgagggacgccaggggcctcctgggccccctggacccccagggcccccgggaccccct
tcctttcctggcccctacaggcagaccatcagtgttcctggcccgccaggcccacctggg
cccccaggaccccctggatccatgggcacttcttcagggggatccactgggctgggcttc
cagcaggtgagggtctgggccacgtaccagatgctggtggaccaggtgacgcaggtgccg
gagggctggctcatctacgtggccgacagggaggagctgtacgtccgggtccggaatggg
ttccggaaggttctgctggaggcccacgtgcccctcccccatgggacggacaacgaggtg
gccgtcttgcagcccccgctggtgcagctgcatgagggtaatccctacccccgccgggag
gtcccacacccgacagcgcggtcctggcgggcggacgacatcctggccagtcccccgcgc
ctgccgcacccccagccctaccccggcgccccgcaccacggcgcctacgcacacctccgg
ccggtgccccccacggcctcgccctcccacacccaccacgacttccagccggtgctgcac
ctggtggcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggcgccgacttc
cagtgcttccagcaggcgcgcgccgcggggctgaccggcaccttccgcgcgttcctgtcc
tcgcggttgcaggacctgtacagtatcgtgcgccgcgccgaccgggccaccctgcccgtc
gtcaacctcagggacgaggtgctgtttcctagctgggaggccttgttctctggctccgag
ggccagctgaagcccagcgcccgcatcttctccttcgacggcagagatgtcctccagcat
cccgcctggccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgacc
gagagctactgcgagacatggcggacagacagcagggcggccacgggccaggcctcctcg
ctgctggcgggccggctgctggagcagaaagccgctgggtgccacaacgccttcatcgtc
ctctgcatcgagaacagcttcatgacctcctcctccaagtag
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