Bubalus kerabau (carabao): 129645759
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Entry
129645759 CDS
T11435
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129645759 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bke03019
]
129645759 (SKIC2)
Enzymes [BR:
bke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129645759 (SKIC2)
Messenger RNA biogenesis [BR:
bke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129645759 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
129645759 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
129645759
NCBI-ProteinID:
XP_055427113
LinkDB
All DBs
Position
3:25168158..25178569
Genome browser
AA seq
1254 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAER
LFLSSPTWLPLHGVEHSTRKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSSTTSLSLRRPPAPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTLPPGFKKGVDFAPKDHSAPAAGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRQD
TVSASPGSVPLARASSLEDLVLKAYTPLLLQEAATTVAPPEPPKPPPQEQWAIPVDVTSP
VGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHNSVFVAAHTSAGKTVVAEYAIALAQKH
MTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSD
VIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKR
RQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKH
AQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLT
TSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFS
RGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPT
GTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSE
FPSRKDSKAHEQTLAELTKKLGALEEPEVTGQLVDLPEYYSWGEELTETRSQIQHRIIES
VNGLKSLSAGRVVVVKNQEHHNALGVILQVSSNSTSRVFTALVLCDKPVSEDPRERGPAS
PDVPYPDDLVGFKLFLPEGPCDHTVAKLQPGDMAAITTKVLRLNGDKILEDFSKRQQPKF
KKDPPSAAVTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGA
QCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAG
TVKLAGRVACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLK
QGVERVRTVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTP
EGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtagagctgggatgcactgggcgctgggagttgctgaatgtgcctggggctccagag
agcacccttccccacggccttcctccctgtgccccagatctgcagcaggaagcagagcgg
ttgtttctgtcatctccaacctggctgcctctgcatggtgtggagcactcaacccggaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcgtccacaacctccttgtctcttcgccggccaccagcgccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccactataacagatctgagcactcgtgaggaggctgaggaggagatagactttgag
aaagacctccttactcttccacctggcttcaagaaaggcgtggacttcgcaccaaaggat
cactcagctccagctgccgggttgctcagcctcagccgtctgctggagcccttggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagcctggcggtcccagacaggac
actgtttcagcctctcctggcagtgttcctctggcccgagcaagcagcttggaggaccta
gtgttgaaggcctacacccctctccttctccaggaagcggccacaactgtagccccccca
gaacctcccaagcccccacctcaggagcagtgggccattcctgtggatgtcacctcccct
gttggtgatttctaccgcctcattccccagccagccttccagtgggcgtttgagccagat
gtgttccagaaacaggccatcctgcacttggagcggcacaactcagtctttgtcgcagct
cacacatccgccgggaagacggttgtggctgaatatgccatcgcgcttgcccagaaacac
atgacgcgcaccatctatacttcgcccatcaaggctctgagcaaccagaagttccgggac
ttccgaaacacgtttggggacgtggggctgctcactggggacgtgcagctgcacccagaa
gcctcgtgcctcattatgacaacggagatccttcgctccatgctgtacagtggctcggac
gtcatccgggacctggagtgggtcatctttgatgaggttcactatatcaatgatgctgag
cgcggggtcgtgtgggaggaggtactcatcatgctgcctgaccacgtgtccatcatcctt
ctgagtgctactgtccccaacgcccttgagtttgctgactggatcgggcggctgaagcgt
cgccagatctatgtgatcagcaccgtcgctcgcccagtgcccctggagcactatctcttc
acggggaacagccccaagacccagggggagctcttcctgttgctggactcccgtggcgcc
ttccacacaaaggggtactatgcggctgtggaggccaagaaggagcggatgagcaagcat
gcccagacctttggggccaagcagcccacgcatcagggggggcctgcccaggaccgcggt
gtgtacctgtccctcctggcctccctccgcacccgtgcacagctgcccgtggtggtgttc
accttctcccggggccgctgtgacgagcaagcctcaggcctcacctccctcgacctgact
acgagttcagagaagagtgagattcacctcttcctgcagcgctgccttgcccgtctccgc
ggctctgaccgccagctgccccaggttctgcacatgtcggagctcctgcaccgcggcctg
ggtgtgcaccacagtggcatcctgcccatcctcaaggagattgtggagatgctcttcagc
cgcggcctggtcaaggtcttgtttgccacggagaccttcgccatgggtgtaaatatgccg
gcccggacggtggtatttgactccatgcgcaagcacgatggctccaccttccgggaccta
ctccctggggagtatgtgcagatggctggccgggcgggccggaggggcctggaccccacg
ggcacggtcatcctgctctgcaagggccgcgtgcccgagatggcggacctgcaccgcatg
atgatggggaagccatcccagctgcagtcccagttccgcctgacgtacaccatgatcctc
aacctgctgcgggtggatgctctcagggtggaggacatgatgaagaggagcttctcagag
tttccatctcgcaaggacagcaaggcccatgaacagactctggctgaactgaccaagaag
ttgggagctttggaagagcctgaggtgactggccagctcgtcgacctgcctgagtattac
agctggggggaggaactgactgagacccggagccagatccagcaccgcatcatagagtct
gtgaatgggctgaaatctctctcagcaggaagggtggtagttgtgaagaatcaggagcat
cacaacgcactgggtgtgatccttcaggtctcttcgaactccaccagcagagtattcaca
gccctggtcttgtgtgacaagcccgtgtctgaggacccgcgggagagggggccagcctcc
ccagacgtgccctacccagacgacctcgtgggattcaagctgttcctgcctgaggggccc
tgtgaccacactgtggccaagctccagccaggagacatggccgccatcaccaccaaggtg
ctccggctgaatggggacaagatcttggaggacttcagcaagcggcagcaaccaaaattc
aagaaggatccgccctctgcggccgtgaccactgctgtccaggaactgctacgactggct
caggcacaccccacaggaccccccaccctcgaccctgtcaatgacctgcaactcaaggat
gtgtctgtggttgagggggggctccgggcccggaagctggaggagctgatccggggggct
cagtgtgtgcacagtccccgcttccctgcccagtacctgaagctgcgggagcggatgcag
atccagaaggagatggagcggctgcgcttcctgctgtcggaccagtcgctgctgctgctc
ccggagtaccaccagcgagtagaggtgctccgaaccctggggtatgtggacgaggcaggc
acagtgaagctggccgggcgggtagcttgtgccatgagcagccacgagctgctcctcact
gagctcatgttcgacaatgcactgagcaccctgcggcctgaggagattgctgccctgctc
tccggcctggtctgccagagccccggggaccctggcgatcagctccccagcaccctcaaa
cagggggtagaacgggtccggactgtggccaagcggattggtgaggtccaggtggcctgt
ggtttgaaccagaccgtggaggaatttgtcggggagctgaatttcgggctggttgaggtt
gtgtacgagtgggcccggggcatgcccttctctgagttggcagggctctcagggacccct
gagggcctggtggtccgctgcatccaacgcctggccgagatgtgtcgctcacttcggggg
gcagcccgcctggtgggcgaacctgtgctaggtgccaagatggagacggcagccaccctg
ttacggagggacatcgtctttgctgccagcctctacacccagtga
DBGET
integrated database retrieval system
