Bubalus kerabau (carabao): 129646424
Help
Entry
129646424 CDS
T11435
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129646424 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bke03041
]
129646424 (PRPF40A)
Spliceosome [BR:
bke03041
]
Complex A
U1 snRNP components
U1 related factors
129646424 (PRPF40A)
Complex B
129646424 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
129646424
NCBI-ProteinID:
XP_055428528
LinkDB
All DBs
Position
3
Genome browser
AA seq
971 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENHPPSRGLGDGERRLSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTST
PSVQDQSEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE
KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKES
FQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQL
RKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRF
TNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISST
KRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAV
WEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRS
RSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSP
ESDAEREKDKKEKDREGEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRR
RTLLEQLDDDQ
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatggtgagtgaaatggagaaccatcctccctcgcggggt
ctcggggacggggagcggagattgtccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattatgcccca
atgggaatgcatcctatgggtcagagagcaaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgcccccaatgggaggaccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgcctta
ccgccaggagtaaataatatggatgtagcagcaggtacaacttctggcgcaaaatcaatg
tggactgaacataaatcacctgatggaaggacctactactacaatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaactcctgctgagcaacttttatctaaatgc
ccttggaaggagtacaagtctgactctggaaagccttattattacaattctcaaacaaaa
gaatctcgctgggccaaacctaaagaacttgaagaccttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaaacaagaagagtgcaccacaacatcagcagccccagttcctacaacagaaattcca
accacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagcc
gcagcagcagcagctgctgctgcagccaatgccagtgcttccacttctgcctctagtact
gtcagtggaactgttccagttgttcctgagcctgaggttacttcgattgttgctactgtt
gtagataatgaaaatacagtaacaatttctactgaagaacaagcacaacttactagtacc
ccttctgttcaggatcaaagtgaagtgtctagtaatactggagaagaaacatctaagcag
gaaactgtagctgattttactcccaaaaaagaagaggaagaaagccaaccagcaaaaaaa
acatatacttggaatacgaaagaggaggcaaagcaagcatttaaagaattattaaaagaa
aagcgtgtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatcca
cgatatagtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttataaagtc
caaacagagaaagaagaaaaagaagaagcaagatccaaatacaaagaggctaaggaatcc
tttcagcgttttcttgagaatcatgagaaaatgacttccacaactagatacaaaaaagca
gagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaa
atctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttg
cgaaagaggaattgggaagccttaaaaaacatacttgacaacatggctaatgtgacatat
tctactacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagat
gaggaattacagaatatggataaagaagatgcattaatttgctttgaggaacacattcga
gctttagaaaaggaagaggaagaagaaaaacaaaagagtttgcttcgtgaaaggagacga
cagcgtaaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaa
ctgcattctatgtcatcttggatggaattgtatccaacaattagttctgacattagattc
actaatatgcttggtcagccgggatcaactgcacttgaccttttcaagttttatgttgag
gatcttaaagcacgttatcatgatgaaaaaaagataataaaagacattctgaaggataaa
ggatttgtagttgaagtaaatactacttttgaagactttgtggcaataatcagttcaact
aaaagatcaaccacattagatgcaggaaatattaagctggctttcaatagtttactagaa
aaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaacgaaaa
gaatctgcatttaagagtatgttgaaacaagctactcctccaatagaattggatgctgtc
tgggaagatatccgggagagatttgtaaaagagccagcatttgaggatataactctagaa
tctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaatgtcaacat
catcattcaaaaaacaagaagcattctaagaaatctaaaaaacatcacaggaagcgctcc
cgctcccgatcagggtcagattcagatgatgatgacagccattcaaagaaaaaaagacag
cgatcagagtctcgttctgcttcagaacattcgtctagtgctgaatctgagagaagttac
aagaaatcaaaaaaacataagaagaaaagcaagaagagaagacataaatcagactctcca
gagtcagatgctgaaagagaaaaggataaaaaagaaaaagaccgggaaggcgaaaaagac
agaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaggat
tctggtaattgggatacttctggcagtgaactgagtgaaggggaattggaaaagcgcaga
aggacccttttggagcaactggatgatgatcaataa
DBGET
integrated database retrieval system
