Bubalus kerabau (carabao): 129647778
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Entry
129647778 CDS
T11435
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bke Bubalus kerabau (carabao)
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bke03016
]
129647778 (RTCB)
Enzymes [BR:
bke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129647778 (RTCB)
Transfer RNA biogenesis [BR:
bke03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129647778 (RTCB)
Prokaryotic type
tRNA splicing ligases
129647778 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
129647778
NCBI-ProteinID:
XP_055430740
LinkDB
All DBs
Position
1:51119101..51140688
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagttcttggaaaagatcagtaagaactgctgg
agaatcaagaagggcttcgtgcccaatatgcaggttgaaggagttttctatgtgaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccatcggtcttcctgatgtccattcaggttatgggtttgctattggaaatatggca
gcctttgatatgaacgaccctgaagcagtggtatccccaggtggtgttgggtttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagcgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagggctaaaaaaagaggccttccccagctgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtcgccacagatgcacttgtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaattgcttcc
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatcccctcattgcggttgattaccaacttaccggacaaccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaagtcaaga
cgtaatttagatttccaggacgtcctcgacaaattggcagacatgggaattgcaatccgt
gtcgcctcacccaagctggtaatggaagaggcccccgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgaggccaatt
gctgttatcaaaggatag
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