KEGG   Bubalus kerabau (carabao): 129649311
Entry
129649311         CDS       T11435                                 
Symbol
PER1
Name
(RefSeq) period circadian protein homolog 1 isoform X1
  KO
K21944  period circadian protein 1
Organism
bke  Bubalus kerabau (carabao)
Pathway
bke04710  Circadian rhythm
bke04713  Circadian entrainment
Brite
KEGG Orthology (KO) [BR:bke00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    129649311 (PER1)
   04713 Circadian entrainment
    129649311 (PER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bke03400]
    129649311 (PER1)
DNA repair and recombination proteins [BR:bke03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    129649311 (PER1)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 129649311
NCBI-ProteinID: XP_055432579
LinkDB
Position
4:36474673..36490218
AA seq 1288 aa
MSRSGPLEGAEGGGDPRPGEPFCPGGGPSPGPPEHRPCPGPSLADDTDANSNGSSGNESN
GPESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQSPSPPSSSIAYSLLSASSEPDN
PSTSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQAN
QEFYQQWSLEEGEPCAMDMSTYTLEELEHVTSEYTLRNQDTFSVAVSFLTGRIVYISEQA
GVLLRCKRDVFRGTRFSELLAPQDVGVFYGSTTPSRLPTWGPGTSTGSGLKDFTQEKSVF
CRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIPPDKR
IFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQ
PFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFTPPVPSP
ALSLDSDIQELSEQIHRLLLQPVHSPSPTGLCGVGPVPSSGPLLSPGSSSDSNGGDAEGP
GPPAPVTFQQICKDVHLVKHQGQQLFIESRARPLPRPRVPATGTFKAKTLPCPSPDLEAS
PAPIQAPVALAAEEAERKEASSCSYQQINCLDSILRYLESCNLPGTAKRKCASSSSCTAS
SASDDDKQRAGPVSVGTKKDPSAVLPGEGATPLKEPVVGGGALSPLALANKAESVVSITS
QCSFSSTIVHVGDKKPPESDIIMMEDLPSLPPGPAPSPAPSPTVAPDPAPDAYRPVGLTK
AVLSLHTQKEEQAFLSRFRDFSRLRGLDSSSTAPSAPGERGCHHSLAIPGRRHHCRSKAK
RSRHHQTARAEAPGYVSQPSPVPPSAPWPPPPATPPFPAVVQPYPLPVFPPRGGPQPLPP
APTSVPPAAFPAPLVTPMVALVLPNYLFPTPSTYPYGAPQMPAEGPPTPASRSPSPSLPS
LPPSPPHRPDSPLFNSRCSSPLQLNLLQLEEAPRGEGGAAAGGSGSSAGHPPPSEEMAEP
EARLAEVTESSNQDALSGSSDLLELLLQEDSRSGTGSAASGSLGSGLGSGSGSHEGGSTS
ASITRSSQSSHTSKYFGSIDSSEAEAGAAQAKAEPADQVIKYVLQDPIWLLMANADQRVM
MTYQVPSSRDMASVLKQDRERLRAMQKQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMA
CVDCGSSTQEPGHPDDPLFSEVDGLGLEPMEEGGGEGGGGGGEGEGSDEAQAQAGARVSS
SQDLAMEEEEQGGSSPSPALPTTENGTS
NT seq 3867 nt   +upstreamnt  +downstreamnt
atgagcaggagcggccccctagaaggggctgaagggggaggggaccccaggccaggggaa
cccttttgtcctggagggggtccatcccctgggcctccagagcaccgaccttgtcctggc
cccagcttggctgatgacacggatgccaacagcaatggctctagcggcaatgagtccaat
ggacccgagtccaggggtgcatctcagcggagttcgcacagctcctcctccggcaatggc
aaggactcagccctgctggagaccactgagagcagcaagagcacgaattctcagagccca
tccccacccagcagttccattgcctacagcctcctgagtgccagctctgagccagacaac
ccttctaccagtggctgcagcagtgaacagtcagctcgggcaaggactcagaaagaactc
atgacggcactgcgagagctcaagcttcggctgcccccggagcgcaggggcaagggccgc
tccgggactctggccacactgcagtacgcgctggcctgtgtcaagcaggtgcaagccaac
caggagttctaccagcaatggagcctggaggagggcgaaccgtgtgccatggacatgtcc
acctatactctggaggagctggagcacgtcacgtctgagtacacactccgcaaccaggac
accttctccgtggctgtctccttcctgacaggccgcatcgtctacatttccgagcaggcg
ggtgtcctgctgcgctgcaagcgggatgtgttccggggcacccgcttctcagagcttttg
gcaccccaggacgtgggcgtcttctacggttccaccaccccatcccgcctgcccacctgg
ggcccagggacctccacaggttcaggcctcaaggacttcacccaggagaagtctgtcttc
tgtcgtatcagagggggtcctgaccgggatccagggcctcggtaccagccattccgccta
accccatatgtgaccaagatccgggtctctgacggggcccctgcccagccatgctgcctg
ctcattgcagagcgcattcactctggttatgaagctccccggatccccccggacaagagg
atcttcaccacacggcacactcccagctgcctcttccaggacgtggatgagagggccgcc
ccgctgctgggctacctcccccaggacctcctgggggccccagtgctcctcttcctgcat
ccggaggaccgacccctcatgctggccattcacaagaagatcctgcagctggccggccag
ccctttgaccactcccctattcgcttctgtgcccgtaacggggagtacgtcaccatggac
accagctgggctggtttcgtgcacccctggagccgcaaggtggcctttgtgttgggccgc
cacaaagtacgcacggcgcccctaaatgaagatgtattcactcccccggtccccagcccc
gctctgtccctggactctgacatccaagagctctcggagcagatccaccggctgctgtta
cagcctgtgcacagccccagccccacgggcctctgtggagtaggccccgtgccttcctct
ggccctctcctcagccctggctcctccagtgacagcaatgggggtgatgccgagggacct
gggcctcctgccccggtgaccttccagcagatctgtaaggatgtgcacctggtgaagcat
caggggcagcagctttttattgagtcccgggcccggcctctgccccggccccgtgtccct
gctactggcacattcaaggccaagacccttccctgcccatccccagacctggaggcgtcc
ccggctccaatccaggccccagtggccttggccgctgaggaggctgagcggaaagaagcc
tccagttgctcctaccagcagatcaactgcctggacagcatcctcaggtacctggagagc
tgtaacctccccggcacggcaaagcgcaaatgtgcctcctcctcttcctgcactgcctct
tcggcctccgacgacgacaagcagcgggcaggcccagtctctgtgggcaccaagaaagat
ccatcagcagtgctgcctggggagggggccacccctctgaaggagccggtggtgggagga
ggagccctgagcccgctcgccctggccaataaggcggagagcgtggtgtccatcaccagt
cagtgtagcttcagctccaccatcgtccatgtgggagacaagaagcccccggagtcggac
atcatcatgatggaggacctgcccagcctgcctcccggtccagctcccagcccagccccc
agtcctacagtagcccctgacccagccccagacgcctaccgcccagtgggcctgaccaag
gctgtgctgtccctgcacacacagaaggaggagcaggccttcctcagccgcttccgtgac
ttcagcaggctgcgtggactggacagctcctccacagccccatcggcccctggcgagcga
ggctgccaccacagccttgccatccccggccgccgccaccactgccgatccaaagccaag
cgctcacgtcaccaccagacagctcgggctgaagcccccggctacgtctcccagccctcg
cctgtgccaccctctgccccctggcccccgccaccagccactcctcccttcccagctgtg
gttcagccataccctctccccgtgttccccccgagaggtggccctcagcctctccctcct
gctcccacatctgtgcctcctgcagctttccctgcccccctggtgacccccatggtggcc
ttggtgctccctaactatctgttccctaccccatccacctacccctacggggcaccccag
atgcctgccgaggggcctcctacccctgcctcccgctccccgtctccgtccctgccctcg
ctgccccccagccctccccaccgccccgactctccgctcttcaactcaagatgcagctcc
ccactccagctaaacctgctgcagcttgaggaggcccctcgcggtgaggggggtgcagcg
gcagggggctctgggagcagtgctgggcacccccctcccagcgaggagatggcagaacca
gaggccagactggcggaggtaactgagtcctccaaccaggatgctctctcgggctccagt
gacctgctggagttgctgctacaagaggactcacgatcaggcacgggctctgctgcctca
ggctccttgggctccggcttgggctctggttcaggctcccatgaagggggcagcacttcc
gccagcatcacgcgcagcagtcagagcagccacacgagcaagtactttggcagcatcgat
tcttcagaggctgaggctggggctgcccaggccaaggctgagcctgcggaccaggtcatt
aagtatgtgctccaggatcccatctggctgctcatggccaatgctgaccagcgtgtcatg
atgacttaccaggtgccctccagcagggacatggcctctgtgctgaagcaggacagggag
cggctccgggccatgcagaagcagcagcctcggttctcggaggaccagcggagggaactg
ggtgctgtgcactcctgggtccggaaaggtcaactgcctcgggcccttgatgtgatggcc
tgtgtggactgcggtagcagcacccaagagcctggccatcctgatgaccctctcttctca
gaagtggatggactggggctggagcccatggaggagggcggaggcgagggtggtggcggt
ggtggtgagggtgagggcagcgatgaggcccaggcccaagctggggccagggtctcgagc
tctcaggacctggccatggaagaggaggagcaaggtgggagctcacccagtccagcctta
cctaccacagaaaatggcaccagctag

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