Bubalus kerabau (carabao): 129653226
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Entry
129653226 CDS
T11435
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
bke Bubalus kerabau (carabao)
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bke03000
]
129653226 (RC3H1)
04121 Ubiquitin system [BR:
bke04121
]
129653226 (RC3H1)
Transcription factors [BR:
bke03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129653226 (RC3H1)
Ubiquitin system [BR:
bke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129653226 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
129653226
NCBI-ProteinID:
XP_055438665
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All DBs
Position
5:complement(110168631..110243654)
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AA seq
1133 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVSEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILPEE
GAVDLPSRKTPALPNGIVSAGNAVTQLIPRGTDPSYESSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISTLPVNPHPVPPRGPTELPPMPVTKPLQMVARGSQLYPAQQADVYYQDPRGAA
PPFESAPYQQGMYYAPPPQCVSRFVRPPPSAPEPGAPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYAREEIFRESPIPIEIPPAAVPPYVPEPRERYQQMEGYYP
VAPHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPSAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKSINISDYGPYGTHGGWGGSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLAGQSQPPPPPPPKWPGMI
SSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLT
LTFSDVPNGSALTQENISLLSNKTSCLNLSEDPEGGGDNNDSQRSGVTSSSTP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
tttgacgaaacaattagaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgaactcctcccagtgaactcagcattgttgcagctagtgggtgctcaggtttctgag
cagcagcccattactttgtgtagtggggttgaagatacaaaacattatgaggaagccaaa
aaatgcgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagtactactcagagtgttctgagtcgcccaatgcagaggaagctagtgacgctg
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacggacagttacagagctcattctccaacaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagccctaaagctggttctcctggccttagaagatggttctgctttgtctagaaaa
gtattggttctctttgtggtgcaaagattggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctgtatggggaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ttggttgctgtgcgtacagtggtacatgggctggttgattatatccagaatcacagcaaa
aaaggaacagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcggggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcctagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttccggaagaa
ggggcagtggatctgcctagcagaaaaacccctgctctgccgaatgggattgtatcagca
gggaatgcagtaacacaactgattccacgagggacagaccccagctacgaatccagtctg
aaaccaggaaagatcgatcacttgagcagtagtgcccctgggtcccctcctgacctgcta
gaatcagtccctaagagtatttctaccttgcctgttaatccgcatcctgtacctccaaga
ggaccaacagagctgccccctatgcctgtcactaaacctcttcagatggtggcgcgaggt
tctcagctctatccagcacagcaggctgatgtttattaccaggatcctcgaggagccgct
ccgccgttcgaatcagcaccttatcagcagggtatgtactatgctccacctccacaatgt
gtgtctcgttttgtccgacctccaccatctgctcctgaacctggtgctccctacttggat
cattatccgccatacctccaagatcgtgtagtaaactcacagtatggcacacagccacaa
cagtaccctcctatgtacccaccacactatgatggccgtcgagtatacccagctcagtct
tacgcaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca
gtgccaccctatgtaccagaacccagagaaagataccaacaaatggaaggttactatcca
gtggctccacacccaactcagatcagaccttcatacaacagagagcctccatacagtcgg
cttccgcctcctccccagccccatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcacagctagaagaaaggaaggttatctctccacctccttttgcaccttcacca
acattgccttctgccttccatcaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtattcaccctggtcatgtgacactattggctcc
tacattggaaccaaagatgcaaaacctaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaatgagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgatctcatcccatttggagaccgaccaacagtatctcggtttggt
gccatttctcgaacttccaaaacgatatatcagggtgctggcccaatgcaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattatggtccatatggaacccat
ggtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggctagtcatggaaaaccccttccatct
gctgagagggaacagctacgactagaattacagcagctaaaccatcaaattagccaacag
acccagctacgtggactagaggctgttagtaacagactggtgttgcagagggaggcgaat
accttggcaggccagtcacagcccccaccaccaccacctccaaaatggcctggaatgatt
tcaagtgagcagttgagtttggaactgcaccaggtggaaagggaaattgggaagagaacc
cgggaactgagtatggagaaccagtgttctctggacatgaaaagcaaattgaatacaagt
aagcaagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggaccttacg
ttaacattcagtgacgtgcctaatggatcagcattgacacaagagaatatcagcctcctg
tccaacaagaccagctgtctgaacctgtcagaggaccctgagggaggaggggacaataat
gactcccagagatcaggagttacatccagttctactccataa
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integrated database retrieval system
