Bubalus kerabau (carabao): 129655644
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Entry
129655644 CDS
T11435
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bke Bubalus kerabau (carabao)
Pathway
bke03015
mRNA surveillance pathway
bke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129655644 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
129655644 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bke03019
]
129655644 (PABPC4)
03041 Spliceosome [BR:
bke03041
]
129655644 (PABPC4)
Messenger RNA biogenesis [BR:
bke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129655644 (PABPC4)
mRNA cycle factors
Stress granule specific factors
129655644 (PABPC4)
Spliceosome [BR:
bke03041
]
Complex C
Other components
Complex C specific factors
129655644 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
129655644
NCBI-ProteinID:
XP_055442280
LinkDB
All DBs
Position
6:107100285..107113588
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AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggacaccatgaactttgatgtaattaagggaaag
ccgatccggatcatgtggtctcagagggatccgtctctgagaaaatctggtgtgggaaac
gtctttatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttgggaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gccgaacttggagccaaagccaaggaattcaccaatgtttacatcaaaaactttggggaa
gaggttgatgatgagaatctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcactgggaaggtc
attttcgttggccgtgcacaaaagaaagtggagcggcaggctgagttaaagcgaaaattt
gaacagctgaagcaggagaggattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccatcgatgacgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaaggatttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaatggacgcatcgtgggctcc
aagccactttatgtcgctctggcccagagaaaggaggagagaaaggctcacctgaccaac
caatatatgcagcgggtggccgggatgagggcactgcccgccaacgccatcttaaatcag
ttccagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacca
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
aacttagcgcctcgtgccgctgttgctgctgctgctcctcgggctgttgcaccttacaaa
tatgcctccagcgtccgcagtcctcacccggccatccagcccctgcaggcaccccagcct
gcggtccacgtgcaggggcaggagccactgaccgcctccatgctggctgcagcacccccc
caggagcagaagcagatgctgggtgaacgtctgttcccactcatccagacgatgcactcg
aacctggctgggaagataactgggatgctgctggagatcgacaactcagagctgctgcac
atgctggagtcccccgagtctctccgctccaaggtggatgaggctgtggcggtccttcag
gctcatcatgccaagaaagaagctgctcagaaggtgggcgctgttgctgctgctacctct
tag
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