Brachybacterium kimchii: M4486_03120
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Entry
M4486_03120 CDS
T08303
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4486_03120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bki03019
]
M4486_03120
03009 Ribosome biogenesis [BR:
bki03009
]
M4486_03120
Enzymes [BR:
bki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M4486_03120
Messenger RNA biogenesis [BR:
bki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M4486_03120
Ribosome biogenesis [BR:
bki03009
]
Prokaryotic type
rRNA processing factors
M4486_03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UQN30350
LinkDB
All DBs
Position
687089..690424
Genome browser
AA seq
1111 aa
AA seq
DB search
MAEDISTPDTSASQETPSTTSGTGRAKRPRRRAGSPVGAPQHQETAPEPDAPQRHTTVAA
QQTPTSEPAPAPAEKPATTRRRRAAGAPAGPPAAPTSPAEPVEAADERTAAADAAGTPVV
ETAAAETPAEPAPETAPAADAADETDAADETDDAASTEVEPEDSDDAEDSEQPSGVAADL
QALAENRPHEPKRAVREQTQIDFASLIFQAPTPEKRTTVPEQRAGHDDEDHESGSAELSF
GTASRGSRRRRATRPQSEAVLPEQEHAPSDGEDAAEADETDVSSDEQAQEEQGGRGRGSR
GRRSSSRRRRGSSRGEASEDESGEENGPASGEDRRARRDDARDDAEADASGADEDNDGSG
EEEDGQSSGSSRRRRRRGGRGRRGRGRGEDSADREDEDSRDDERSEDSSDDASERLKKEK
KDTQDSSADDSESRDTQDGEDQGKDEDGSSGGSSSRRRRRRRRSGSSSGSENGASADDPP
NTVVKVREARDEVKAVKGSTRLEAKKQRRREGRDQGRRRSVITEAEFLARRESVKRSMVV
RERKGSTQIAVLEDDILVEHYVAQKSHTSMVGNVYLGKVQNVLPSMEAAFVDIGKGRNAV
LYAGEVNWDAAGLEGQPRRIELALSSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFV
PGGSMTGISRKLPDAERSRLKKIMKQVIPEDAGVIVRTASEGASEEELTRDVERLRKQWD
RIQKAQKSKSAPASLSQEPDLAIKVVRDVFNEDFTSLIVEGESVHSDVHEYVSDVAPDLL
ERVTKHVGEKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGAG
GSLEETVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGRDRT
KHQVAEVTSLGLVQMTRKRVGAGLVETFSTTCEACAGRGMIVDLDGVDTGHQHHGGQGSQ
DDDSSKGGRRRKGKSKGGSGNSGNGNGSNGGGNSGNGSGANGSGGGNGGSGRGSQSAQEA
VEELTASTDVHRLESDSASRALARATIASIAAATGTKEEHPEVVVDGEAVTVEAEAPQAA
GDTPQQATEVTPDAADGSASAEARDDSAADA
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggacatcagcacccccgacacgtcggcgtcgcaggagacgcccagcaccacg
agcggaacggggagggcgaagcgtccgcgccgccgcgccggatccccggtcggcgcgccg
cagcaccaggagacggcgcccgagcccgacgctccccagcggcacaccaccgtcgccgcc
cagcagactccgacgagcgagccggcccccgcaccggccgagaagcccgcgaccacgcgc
cgacgccgcgccgccggcgcccccgccggcccgcccgccgcgccgacctcccccgccgag
cccgtcgaggccgccgacgagcggaccgcggcagctgatgccgccgggactcccgtcgtc
gagaccgccgcggccgagacccccgccgagcccgcgcccgagacggcccctgcggccgat
gccgcggacgagaccgatgccgcggacgagaccgacgacgccgccagcacggaggtcgag
cccgaggactccgatgacgccgaggactcggagcagcccagcggcgtcgccgcggacctg
caggctctcgccgagaaccgcccgcacgagccgaagcgggccgtgcgcgagcagacccag
atcgatttcgcctcgctcatcttccaggcgcccacgcccgagaagcgcaccacggtgccc
gagcagcgcgccggccacgacgacgaggaccacgagtccggcagtgcggagctgtccttc
ggcaccgcctcccgcggttcgcgccgccgccgcgccacccggccccagagcgaggcggtg
ctccccgagcaggagcacgcgccctcggacggcgaggacgccgcggaggccgacgagaca
gacgtgagctcggacgagcaggcgcaggaggagcagggcggccgcggccgcggctcccgc
gggcgccgctcctcgagccgtcgccgccgcggctcgtcccggggcgaggcctccgaggac
gagtcgggcgaggagaacggcccggcatccggcgaggaccgccgcgcccggcgcgatgac
gcccgcgacgacgccgaggcggatgcgagcggcgcggacgaggacaacgacggcagcggc
gaggaggaggacggccagtcctccggctcctcgcgtcgccgccgtcgccggggcggccgt
ggtcgccgcggacgcggacggggcgaggactccgccgatcgcgaggacgaggactcccgc
gacgacgagcgctccgaggactcctccgacgacgcctccgagcgattgaagaaggagaag
aaggacacgcaggactcgtcggcggacgactccgagagccgcgacacgcaggacggcgag
gaccagggcaaggacgaggacggctcctcgggcgggtcgagctcgcgccgtcgtcgccgt
cgtcgccgctccggctcctcgtcgggctcggagaacggcgcgtcggccgacgatccgccc
aacaccgtcgtcaaggtccgcgaggcccgtgacgaggtcaaggccgtcaagggatcgacc
cgcctggaggccaagaagcagcgccgccgggaggggcgcgaccagggccgccgccgcagc
gtgatcaccgaggccgagttcctcgcccgccgcgagtccgtcaagcgctccatggtggtg
cgcgagcgcaagggcagcacccagatcgcggtgctcgaggatgacatcctcgtcgagcac
tacgtcgcacagaagtcgcacacctcgatggtcggcaacgtgtacctgggcaaggtccag
aacgtgctgccgtcgatggaggcggccttcgtcgacatcggcaagggccgcaacgccgtg
ctgtacgcgggcgaggtcaactgggacgccgccggcctcgagggccagccccgccgcatc
gagctcgcgctctccagcggcgacccggtgctggtgcaggtcaccaaggacccgatcgga
cacaagggcgcgcggctgaccagccagatctccctgcccggccgctacgtggtcttcgtg
ccgggcggctcgatgaccggcatctcccgcaagctgcccgacgccgagcgctcgcggctg
aagaagatcatgaagcaggtcatccccgaggacgccggcgtcatcgtgcgcaccgcctcc
gagggagcgagcgaggaggagctcacccgcgacgtcgagcgcctgcgcaagcagtgggac
aggatccagaaggcgcagaagtcgaagtccgctcccgcttccctctcgcaggagcccgac
ctcgccatcaaggtggtccgcgacgtcttcaacgaggacttcacctcgctgatcgtcgag
ggcgagagcgtccactcggacgtgcacgagtacgtctccgacgtcgcccccgacctgctc
gagcgcgtgaccaagcacgtgggcgagaaggacgtcttcgccaagcaccgcatcgacgag
cagctgctgaaggccatggaccgcaaggtctacctgccctcgggcggctccctggtcatc
gaccgcaccgaggcgatgaccgtgatcgacgtgaacaccggcaagttcaccggcgccggc
ggctccctcgaggagaccgtcaccaagaacaacatcgaggccgccgaggagatcgtccgc
cagctgcgcctgcgcgacatcggcgggatcatcgtcatcgacttcatcgacatggtgctc
gaggccaaccgcgacctcgtgctgcgccgcctcgtggagtgcctgggccgggaccgcacc
aagcaccaggtcgccgaggtcacctcgctgggcctcgtgcagatgacccgcaagcgcgtg
ggcgcggggctcgtcgagaccttctcgacgacctgcgaggcctgcgcgggccgcggcatg
atcgtggacctcgacggcgtggacaccggccatcagcatcacggcggccagggctcccag
gacgacgactcctcgaagggcggccgccgccgcaagggcaagtccaagggcggcagcggg
aacagcgggaacgggaacggcagcaacggcggcgggaacagcgggaacgggagcggcgcg
aacggctccggcggcgggaacggcggctcgggccgcggatcccagagcgcccaggaggcc
gtcgaggagctcaccgcctccaccgacgtgcaccgtctcgagtcggacagcgcctcgcgg
gccctcgcccgcgcgaccatcgcctcgatcgccgcggccacgggcaccaaggaggagcac
cccgaggtcgtcgtcgacggcgaggccgtgacggtggaggccgaggccccgcaggccgcc
ggtgacacgccgcagcaggcgaccgaggtcacccccgatgccgcggacgggtccgcgagc
gccgaggcgcgcgacgacagcgccgccgacgcgtga
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