Brachybacterium kimchii: M4486_05520
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Entry
M4486_05520 CDS
T08303
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
bki
Brachybacterium kimchii
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bki03019
]
M4486_05520
Enzymes [BR:
bki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M4486_05520
Messenger RNA biogenesis [BR:
bki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M4486_05520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
SH3_HelY
ResIII
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
GGDEF_2
nSTAND_NTPase5
AAA_22
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UQN31639
UniProt:
A0ABY4NDG7
LinkDB
All DBs
Position
1117595..1120555
Genome browser
AA seq
986 aa
AA seq
DB search
MSSPSEAYARFRAEQRRQGTELAVFRERFDFALDPFQVDGCEALEHGDSVLVAAPTGAGK
TIVGEFAVHLALSQGRKVFYTTPIKALSNQKHDELRAWLGHERVGLLTGDVSLHPEADVV
VMTTEVLRNMLYAGSPLLEGLGFVVMDEVHYLADRLRGPVWEEVIIHLDRSVQLVALSAT
VSNAEEFGTWLQEVRGSTAIIVSETRPVPLWQHVLVGTELMDLFVDEDGERVVSHGPGAR
GRSEINPDLEQVSSLSAPVDGRRGGARGGSGGHRGHGEHGGGGRAGRGHGGRGRSDRRGT
RGRHRPRGHDRHGGDGRHGGDGHRGSSRGETGHAPHLPRPPRQSEIVAILDDEGLLPAIF
FIFSRAGCDASVRRLDQSRVRLTTDSERTRIRAILDERLSVIGVEDEQILHLAQFRRAAE
NGFAAHHAGMLPLLKACVEDLFEEALIKVVFATETLALGINMPARSVVLDKLTKFNGVEH
ADLTPGEFTQLTGRAGRRGIDVEGHAIVVAAPGFDASAVASLASRRTFPLRSAFHPTANM
AVNLLSSFDLEQARETLEMSFAQFQSDRSVVGLARRARELEDTAASYREAAVCERGDLGE
YAEIRRRITEREKTLSQRRSAGDRDRTLRALRALRRGEVIALPGGRRQGYAVVLDVDREV
LGGPQVDVLTAEGRVRSLRPGDVPSPPAVIDTLRLPRPDRMGSAKVRKDTAAALRERLAG
HDHDARAEVRRLAGRTPSTAAEDPELIELRERMRAHPCHTCPELEAHERWLQRLGRAEKD
LASVQRRIEGRTSSLARQFDRLIALLTELGHLAEAPDGGLRPTERGLRLRRLFSDRDLLV
AECLERGAWDELRPAELAAMVSACTYEARRDSPQAPELPPGARFDASLVATERVAKDLRS
AEERHGVDPTAAPDPAISAIMHRWASGEHLAAALQDADLTPGDFVRHCRQVVDLLEQLTD
SPHVSLSARDAIVGVRRGLVAQEMER
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgccctcggaggcctacgcccggttccgcgcggagcagcggcgccaggggacc
gagctcgccgtgttccgcgagcgcttcgacttcgccctcgaccccttccaggtcgacggc
tgcgaggccctcgagcacggcgactccgtcctcgtggcggcgcccacgggcgccggcaag
accatcgtcggcgagttcgcggtccacctcgccctctcccaggggcgcaaggtcttctac
acgaccccgatcaaggcgctgtcgaaccagaagcacgacgagctgcgcgcatggctcggc
cacgagagggtcggcctgctcaccggcgacgtgagcctgcaccccgaggccgacgtggtc
gtgatgaccaccgaggtgctgcgcaacatgctctatgcgggctcgccgctgctcgagggc
ctcggcttcgtcgtgatggacgaggtccattacctcgccgatcgactgcgcggaccggtc
tgggaggaggtcatcatccacctcgaccgctccgtgcagctcgtcgcgctctcggccacc
gtctcgaacgccgaggagttcggcacctggctgcaggaggtgcgcgggagcaccgcgatc
atcgtctcggagacccgcccggtgccgctgtggcagcacgtgctcgtggggaccgagctc
atggacctcttcgtcgacgaggacggcgagagggtcgtctcccacggcccgggagcccgc
ggtcgcagcgagatcaaccccgacctcgagcaggtctcgtcgctctcggcgccggtcgac
ggccggcgcgggggagcgcgcggcggctccggcggtcaccgagggcatggagagcacggc
ggcggaggccgcgccggcaggggccacgggggccgcgggcgcagcgaccgccggggcacc
cgcggacgccaccgcccgcgcggccacgaccggcacggcggcgacgggcgtcacggcggg
gacggacaccgcggcagcagccgcggcgagacgggccacgcgccgcacctgccgcggccg
ccgcggcagtcggagatcgtcgccatcctggacgacgagggcctgctgcccgcgatcttc
ttcatcttctcccgcgccggctgcgacgcctccgtgcgccgactcgaccagtcgcgcgtg
cgcctgaccacggactccgagcggacccgcatccgcgcgatcctcgacgagcgcctgtcc
gtgatcggcgtcgaggacgagcagatcctgcacctggcccagttccgccgcgccgccgag
aacggcttcgccgcccaccacgccggcatgctcccgctgctgaaggcctgcgtcgaggac
ctcttcgaggaggccctgatcaaggtcgtcttcgccaccgagaccctcgcgctcggcatc
aacatgcccgcgcgctcggtcgtcctggacaagctcacgaagttcaacggcgtcgagcac
gccgacctcacaccgggggagttcacgcagctcaccgggcgggcgggccgccgcggcatc
gacgtggagggtcacgcgatcgtcgtcgccgcccccgggttcgacgcctcggcggtggcc
tccctcgcctcccgacggaccttcccgctgcgctccgccttccacccgacggcgaacatg
gccgtcaacctgctgagcagcttcgatctcgagcaggcccgcgagaccctcgagatgagc
ttcgcccagttccagagcgatcgcagcgtggtgggtctggcccgccgcgcccgcgagctc
gaggacaccgccgcctcctaccgcgaggcggcggtctgcgagcgcggagacctgggcgag
tacgcggagatccggcgccgcatcaccgagcgcgagaagaccctctcccagcgccgctcc
gccggcgaccgcgatcgcaccctgagggcgctgcgcgccctgcgccgcggagaggtgatc
gccctcccgggcggccggcgccaggggtacgcggtcgtgctcgacgtggaccgcgaggtc
ctcggcggcccgcaggtcgacgtgctcacggcggagggccgcgtgcgcagcctccgcccc
ggggacgtgcccagccctcccgcggtcatcgacaccctgcgcctgccgcggcccgaccgc
atggggtcggcgaaggtccgcaaggacaccgccgccgccctgcgcgagcgcctggccggg
cacgaccacgacgcgcgcgccgaggtccgtcgtctcgccgggcgcaccccgtcgaccgcc
gcggaggatcccgagctcatcgagctccgcgagcggatgcgcgcccacccctgccacacg
tgccccgagctcgaggcccatgagcggtggctgcagcgcctcggccgcgccgagaaggac
ctcgcctccgtgcagcggcgcatcgagggccgcacctcgtcgctggcccgccagttcgat
cgcctgatcgccctgctcaccgagctcgggcacctcgccgaggctcccgacggcggcctg
cggccgacggagcgcggcctccgcctgcgccgactgttctcggatcgcgacctgctggtc
gccgagtgcctcgagcgcggcgcctgggacgagctgcgcccggcggagctcgccgcgatg
gtctccgcctgcacctacgaggcccggcgcgactccccgcaggcgcccgagctgcctccc
ggcgcccgcttcgacgcgtccctggtcgcgaccgagcgcgtggcgaaggacctgcgctcc
gccgaggagcgccacggcgtcgacccgacggcggcgcccgatccggcgatcagcgcgatc
atgcaccgctgggcgagcggcgagcatctcgccgccgccctccaggacgcggatctcacc
ccgggggacttcgtccgccactgccggcaggtcgtggacctgctcgagcagctcaccgac
tcaccgcacgtctccctctcagccagggatgccatagtcggcgtgcgccgcggtctcgtc
gcccaggagatggagcgatga
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