Brachybacterium kimchii: M4486_06580
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Entry
M4486_06580 CDS
T08303
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03030
DNA replication
bki03430
Mismatch repair
bki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4486_06580
03430 Mismatch repair
M4486_06580
03440 Homologous recombination
M4486_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bki03032
]
M4486_06580
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_06580
Enzymes [BR:
bki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M4486_06580
DNA replication proteins [BR:
bki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M4486_06580
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M4486_06580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
RNase_H_2
DUF7508
DEDDh_C
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UQN30956
LinkDB
All DBs
Position
1361428..1363116
Genome browser
AA seq
562 aa
AA seq
DB search
MTAPLRSGRRRQLSFADLGTPLEEAEMVVVDLETTGTDPSQDAITEIGAVKVRGGEVLGE
FRSFVDPQRPIPAYIASLTGISDATVRGAPRIEAVLPMFLDFAHDAVLVAHNARFDVGFL
RSQAARLEITWPSPPVLDTLALARSVFKRDEVRDHKLGTLAAHVGAQVTPDHRALSDARA
TVDVLHAIIARLGDRGARTVEDLASAHRKVSPVQARKRHLADTVPPVPGVYQFVDREGGV
LYVGTSHDLRSRVRTYFSASETRRRVLDVLPRLHEIRTIECASRLEASVRELRIIAREQP
PANRQGLKPEKALWLRLGPGADGLRAARIARSEDDGSAQIGPLRSRHDVEPLRALLTDAV
MGRGASLEGAGGSGATGAGRRLDPEPHARIRRAMLEDPAPVIAHAAARMRAHVGAHRFED
AARIKGQAEAFLAAAQRAQRLRALAACPMLVAARPAEPRRHPAGAWELLAVRAGRHAGTA
IVPRGTDPVPVARELARRGAGIPLEELPSGPLCHGHHQESELLLHWLEGEGMRLVAVEGT
WAVPLRARFDPQTLQAAFTSAD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctcccctgcgctccggccgccgccggcagctgagcttcgccgatctcggcact
ccgctcgaggaggccgagatggtggtcgtggacctcgagaccacgggcaccgatccgtcg
caggacgcgatcaccgagatcggcgcggtcaaggtgcgcggcggggaggtgctcggcgag
ttccgcagcttcgtggacccccagcgcccgatccccgcctacatcgcctccctcaccggc
atctccgacgcgaccgtgcgcggggcgccgcgcatcgaggcggtgctcccgatgttcctg
gacttcgcgcacgacgcagtgctggtcgctcacaacgcccgcttcgacgtcggcttcctg
cgctcccaggcggcccggctcgagatcacctggccctcccctcccgtcctggacaccctg
gccctcgctcgcagcgtcttcaagcgcgacgaggtgcgcgaccacaagctcggcaccctc
gccgcgcatgtgggcgcccaggtgacgccggaccacagggccctgtccgacgcgcgcgcc
acggtcgacgtgctgcacgcgatcatcgcccggctgggcgatcgcggcgcgcgcacggtc
gaggacctcgcctcggcccatcgcaaggtctctcccgtccaggcccgcaagcgccacctc
gccgacaccgtgccgccggtgccgggcgtctaccagttcgtcgaccgcgagggcggcgtg
ctgtacgtcggcacctcgcacgacctccgctcgcgggtgcgcacctacttcagcgcctcg
gagacccgccgccgcgtgctcgacgtgctcccgcggctccacgagatccgcaccatcgag
tgcgcctcccgtctggaggcgtccgtgcgcgagctgcggatcatcgcccgcgagcagccg
cccgccaaccgccagggcctgaagccggagaaggcgctctggctgcgcctgggcccgggg
gccgacggtctgcgcgcggcccgcatcgcacggagcgaggacgacggctcggcgcagatc
ggtccgctgcgctcgcgccatgacgtggagccgctgcgagccctgctcacggacgcggtg
atgggccgcggcgcctccctcgagggcgcgggcggctccggcgcgaccggggcgggacgc
cgcctggatcccgagccccatgcacggatccgacgggcgatgctcgaggatcccgcaccg
gtgatcgcgcacgccgcggcacggatgcgcgcgcacgtcggagcgcatcgcttcgaggac
gccgcgaggatcaaggggcaggccgaggccttcctggccgctgcccagcgcgcccagcgg
ctgcgcgctctcgcggcctgcccgatgctcgtcgccgcgcgacccgccgagccgcgtcgc
catcccgccggtgcatgggagctgctggcggtgcgcgcggggcgccatgcgggcaccgcg
atcgtgccccgcgggacggatccggtgccggtcgcgcgcgagctcgcgcggcgcggcgcc
gggatcccgctcgaggagctcccgtcggggccgctgtgccacggccatcatcaggagtcc
gagctgctgctccactggctcgagggcgaggggatgcgcctcgtcgccgtcgaggggacc
tgggcggtgcccctgcgcgcccggttcgatccgcagacgctgcaggcggccttcacgagc
gccgactag
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