Brachybacterium kimchii: M4486_06680
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Entry
M4486_06680 CDS
T08303
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4486_06680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bki03019
]
M4486_06680
03009 Ribosome biogenesis [BR:
bki03009
]
M4486_06680
Enzymes [BR:
bki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M4486_06680
Messenger RNA biogenesis [BR:
bki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M4486_06680
Ribosome biogenesis [BR:
bki03009
]
Prokaryotic type
rRNA helicases
M4486_06680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
Flavi_DEAD
Cas3-like_C_2
Rok_N
Motif
Other DBs
NCBI-ProteinID:
UQN30976
UniProt:
A0ABY4NA51
LinkDB
All DBs
Position
1380964..1382874
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AA seq
636 aa
AA seq
DB search
MNDARPSATDPTPETPSTDEPNGPVAESASEAPSAPAAPAAPEEPTFADLDLPGVLQSAV
DRLGFTRPSPIQSEAIPQLLAGRDVIGVAQTGTGKTAAFGLPMLTAVDPSERAAQALVLA
PTRELAMQVAEAISTFAQDVDGLSVTSVYGGSPYGPQERALSRGTQVVVGTPGRVIDHLK
RGNLHLETLRYLVLDEADEMLRMGFAEDVDEILSHAPQSKQVALFSATMPPAIQRVAEEH
MSEPVRVSVSRQASTTTNVSQRFAVVPFRHKTGALARVLATSDAEAAIVFVRTRSAAEEV
GTALVSRGVVAATISGDVPQKEREKIVERLREGSLQVLVATDVAARGLDVDKIGLVVNFD
VPGEPEAYVHRIGRTGRAGRTGEALTFVAPHERRKLRAIEKTTRQTLQEISIPSPRDVSA
HRTEKLLASVPERAERGRLDLYLEKVDAFLESSGMEPRMLAAVLAATAVGDDGPGAEAEG
DEEFTGAHLKGSDRDRESDGKGRPAPGQPEKGFTSYRVSVGHSHGAKPAAIVGAITGEGG
LNGKSIGKIDIFGSFSLVQIRGSLKDDQIDRIGHAKIAGRTLRISEDRGPRTGGRREHGS
RRPDSREGGRHEGGRRFGGPRHEGGPRRDSCGHGGR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgcacgcccctccgccacagatcccacacccgagaccccctcgaccgacgag
cccaacggcccggtcgcggagtccgcgtccgaggcgccgtcggcccctgcggccccggcc
gctcccgaggagccgaccttcgcggacctggacctgccgggcgtgctgcagagcgcggtg
gaccggctcggcttcacgcgcccctcccccatccagagcgaggcgatcccgcagctgctg
gcgggacgcgacgtcatcggcgtggcccagaccggcacgggcaagacggccgccttcggc
ctgccgatgctcaccgcggtcgatccctcggagcgcgcggcccaggcgctcgtgctcgcc
cccacccgcgagctcgccatgcaggtcgccgaggcgatcagcaccttcgcccaggacgtc
gacggcctctcggtgacctccgtgtacggcggctcgccctacggcccccaggagcgcgcg
ctctcgcgcggcacccaggtcgtcgtggggaccccaggacgcgtcatcgaccatctcaag
cgcggcaacctgcacctggagaccctgaggtacctggtgctcgacgaggccgacgagatg
ctgcgcatgggcttcgccgaggacgtcgacgagatcctctcccacgccccgcagtccaag
caggtcgctctcttctccgcaaccatgccgcccgcgatccagcgggtcgccgaggagcac
atgagcgagccggtgcgggtctcggtgtcgcgtcaggcgagcaccacgaccaacgtctcc
cagcgcttcgcggtcgtgcccttccgccacaagaccggcgcgctcgcccgcgtgctcgcg
acctccgacgccgaggcggcgatcgtcttcgtgcgcacgcgctcggccgccgaggaggtc
ggcaccgcgctcgtctcgcggggcgtcgtcgccgcgaccatcagcggcgacgtgccacag
aaagagcgcgagaagatcgtcgagcgcctgcgcgagggctcgctgcaggtcctcgtcgcg
accgacgtcgccgctcgcggcctcgacgtcgacaagatcggcctggtcgtgaacttcgac
gtccccggcgagcccgaggcctacgtccaccgcatcggccgcaccggccgcgcgggccgc
accggcgaggcgctcaccttcgtcgccccgcacgagcggcgcaagctgcgcgcgatcgag
aagaccacgcgccagaccctgcaggagatctcgatcccctccccgcgggacgtctccgcc
caccgcaccgagaagctgctggcctccgtgcccgagcgcgccgagcgcgggcgcctcgat
ctctacctcgagaaggtcgacgccttcctcgagagcagcggcatggagccgcggatgctc
gcggcagtgctcgccgcgacggccgtcggcgacgacgggccgggtgccgaggccgagggc
gacgaggagttcaccggcgcccacctcaagggctccgaccgtgatcgggagtcggacggc
aagggccgtcccgcgcccggccagcccgagaagggcttcacgagctaccgcgtgtccgtc
ggccactcccacggggcgaagcccgcggcgatcgtcggcgcgatcacgggcgagggcggc
ctgaacgggaagtcgatcggcaagatcgacatcttcggctcgttctccctggtccagatc
cgcgggtccctcaaggacgaccagatcgaccgcatcggccacgcgaagatcgccgggcgc
accctgcgcatcagcgaggaccgcggcccgcgcaccggcggccgccgcgagcacggctcg
cgtcgtcccgactcccgcgagggcggacgccacgagggcggccggcgcttcggcggaccg
cgccatgagggcgggccccgccgcgacagctgcggacacggcggccgctga
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