Brachybacterium kimchii: M4486_06980
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Entry
M4486_06980 CDS
T08303
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M4486_06980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_06980 (mfd)
Enzymes [BR:
bki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M4486_06980 (mfd)
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M4486_06980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UQN31020
LinkDB
All DBs
Position
complement(1450581..1454168)
Genome browser
AA seq
1195 aa
AA seq
DB search
MTASNPPAPSAPLAPLLDLVAGGEDLARLRELVAPDPAASDVPVEESATVAPTSLVPFAV
ADLARSATPESPLVVLTATTRAAEDARAALEAMVGTAHVAELPAWETLPHERLSPRADTV
ARRLQTLRRIAHPETEQGVSVLLLPVRSLLQPIAKGLGDLRAVRARVGDDYPLERLEQDL
VDAAYVRTDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEVDEVRYFSIADQRSLES
VPHGLDAAPCREILLSETVRERARDMAEKLPGVRDMLERIAAGIAVDGMESLSPVLVGEM
EQVVDVLPADSRFLVIDPERVRARGAELVSTTDEFLAAAWSSAAAGGGLPIDVGEASFVP
LPDVHEHARSRGQRWHTLAPFGLETDVDLTARAVNHPGYSGRGEDIAKDLTARRTEGWRI
VVTMTGSGGARHAAESLQEQSVPARYVHPLDVPPAPGEPIVTVGPFADGLVDESLRLMVI
SERDVTGKTGQRRAGGERRIPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTSRTVGSG
AKATTREYLVIEYAASKKGQPGDRLYVPSDQLDQVTKYVGGEDPTVNRMGGADWAKTKSR
ARKAIREIADELVRLYSARQSAPGHSFGPDTPWQRELEDSFEFVETPDQLSTIDDVKGDM
EKAVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLSQQHLDTFTERFTGF
PVTVRGLSRFQSDADSQATIEGLRDGSVDVVIGTHRLITGQVRFKDLGLLIIDEEQRFGV
EHKETLKAMRTNVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAEDDK
QITAAIRRELLREGQVFFIHNRVEDIDATAQRLRELVPDARVQVAHGKMNENQLERVIVD
FWEKEFDVLVCTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYSYFLY
DGSKPLTETASDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYV
RMVGEAVAAFRGESTAPTKDVKVELPLDAHVPHDYIASERLRLEAYSKLSGASDPATIEE
VRAELTDRYGAPPAPVEVLLDVARFRLECRDAGLEEVQAQGKMIRFAHLDLPDSVAMRMK
RLYPGTMLKPAVRQVLVPRPTTSRVGGTELRDHELLAWARKVLGVLKPAPAEDAA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctcgaacccgccggctccgtcggccccgctcgccccgctgctcgacctcgtc
gcgggcggtgaggacctcgcgcgcctgcgcgagctcgtcgcccccgacccggccgcctcc
gacgtccccgtcgaggagtcggcgaccgtcgccccgacctccctggtgcccttcgcggtc
gccgacctcgcgcgcagcgccacgcccgagtcgcccctcgtcgtgctcaccgccacgacc
cgtgcggccgaggacgcgcgcgccgccctcgaggcgatggtcggcaccgcgcacgtggcc
gagctgcccgcctgggagaccctcccgcacgagcggctgtccccgcgcgccgacaccgtc
gcccggcgcctgcagaccctgcggcgcatcgcccaccccgagaccgagcagggcgtcagc
gtgctcctgctcccggtgcgcagcctgttgcagccgatcgcgaagggactcggcgacctg
cgcgccgtgcgcgcccgcgtgggtgacgactatccgctcgagcgcctcgagcaggacctc
gtcgacgccgcctacgtgcgcaccgacatggtcgagaagcgcggcgagttcgccgtgcgc
ggcgggatcctcgacgtcttcccgcccaccgagccccaccccgtgcgcgtggacctgttc
ggcgacgaggtcgacgaggtccggtacttctccatcgccgaccagcgctccctggagtcc
gtgccccacgggctggacgccgcgccctgccgcgagatcctgctcagcgagaccgtgcgc
gagcgcgcccgggacatggccgagaagctcccgggcgtgcgcgacatgctcgagcggatc
gccgccggcatcgccgtggacgggatggaatcgctcagccccgtgctggtgggggagatg
gagcaggtcgtcgacgtgctccccgcggactcccgcttcctcgtgatcgaccccgagcgc
gtgcgcgcccggggggcggagctggtctccacgaccgacgagttcctcgccgcggcctgg
tcgagcgccgccgcgggcggcggacttcccatcgacgtgggcgaggcgagcttcgtgccg
ctcccggacgtgcacgagcacgcccgctcccgcggccagcgctggcacaccctcgcaccc
ttcggcctcgagaccgacgtcgacctcaccgcgcgcgccgtgaaccaccccggatactcc
ggtcgcggcgaggacatcgcgaaggacctcaccgcccgccgcaccgagggctggcggatc
gtggtcacgatgaccggcagcggcggggcccgccacgccgccgagtcgctccaggaacag
agcgtgcccgcgcggtacgtccatccgctcgacgtgccgcccgcaccgggcgagccgatc
gtcacggtcggccccttcgccgacggcctcgtcgacgagtcgctccggctcatggtgatc
tccgagcgcgacgtcaccggcaagacgggccagcgccgcgccgggggcgagcggcggatc
ccctcgcgccgccgcaacgtcgtggaccccctgcagctgcggccgggcgaccacgtcgtc
cacgcgcaccacggcgtcggccgcttcgtcgagatgaccagccgcaccgtgggctccggc
gccaaggcgaccacccgcgagtacctcgtcatcgagtacgcggcctcgaagaaggggcag
ccgggggaccggctgtacgtccccagcgaccagctcgaccaggtcaccaagtacgtcggc
ggcgaggaccccacggtcaaccgcatgggcggcgccgactgggcgaagaccaagtcgcgg
gcccgcaaggcgatccgcgagatcgccgacgagctcgtccgcctgtactccgcgcgccag
agcgcgcccggccactccttcggccccgacaccccctggcagcgcgagctcgaggactcc
ttcgagttcgtcgagacccccgatcagctctccacgatcgacgacgtcaagggcgacatg
gagaaggcggtcccgatggaccgcctgatcctcggcgacgtcggctacggcaagacggag
atcgcggtgcgcgccgccttcaaggccgtccaggacggcaagcaggtcgccgtgctcgcc
cccacgacgctgctctcccagcagcatctggacaccttcaccgagcgcttcacgggcttc
cccgtcaccgtgcgcgggctctcccgcttccagtccgatgccgactcccaggccaccatc
gagggcctgcgcgacggcagcgtcgacgtggtcatcggcacccaccgcctgatcacgggg
caggtgcgattcaaggacctgggcctgctgatcatcgacgaggagcagcgcttcggcgtc
gagcacaaggagaccctcaaggcgatgcgcacgaacgtggacgtgctgtccatgtccgcc
acgccgatcccgcgcaccctcgagatggccgtgaccggcatccgtgagatgtccacgctc
gcgaccccgcccgaggagcgccatcccgtgctcacctacgtgggtgcggaggacgacaag
cagatcaccgccgcgatccgccgcgagctgctgcgggagggccaggtcttcttcatccac
aaccgcgtcgaggacatcgacgccaccgcccagcggctgcgcgagctcgtgcccgacgcg
cgcgtgcaggtcgcccacggcaagatgaacgagaaccagctcgagcgggtcatcgtcgac
ttctgggagaaggagttcgacgtgctcgtgtgcaccacgatcgtcgagaccggcctggac
atcgccaacgccaacacgctgatcgtcgagaacgccgaccgcttcggcctctcccagctg
caccagctgcgcggtcgcgtgggccgctcgagcgagcgcgcctactcgtacttcctctac
gacgggtcgaagccgctcaccgagaccgcctcggaccgcctcaccacgctggccaccaac
accgatctcggcgcgggcatgcaggtcgccatgaaggacctcgagatccgcggcgccggc
aacctgctgggcggcgagcagtccggacacatcgccggcgtcggcttcgacctctacgtg
cggatggtgggggaggccgtcgcggccttccgcggcgagtccaccgcgcccaccaaggac
gtcaaggtcgagctgccgctggacgcccatgtgccccacgactacatcgcctccgagcgc
ctgcgcctcgaggcctactcgaagctctccggtgcgagcgatcccgcgaccatcgaggag
gtccgcgccgagctcacggaccgctacggcgcgccgccggccccggtcgaggtgctgctg
gacgtggcccgcttccgcctggaatgccgcgacgccggcctcgaggaggtgcaggcgcag
ggcaagatgatccgcttcgcccacctcgatctgcccgactcggtggccatgcgcatgaag
cgcctgtacccgggcaccatgctcaagcccgccgtgcgccaggtgctcgtcccccggccg
acgacctcgcgtgtgggaggcaccgagctgcgcgaccacgagctcctcgcctgggcccgg
aaggtgctcggcgtgctcaagccggccccggcggaggacgcggcgtga
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