Brachybacterium kimchii: M4486_08115
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Entry
M4486_08115 CDS
T08303
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03030
DNA replication
bki03430
Mismatch repair
bki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4486_08115 (dnaE)
03430 Mismatch repair
M4486_08115 (dnaE)
03440 Homologous recombination
M4486_08115 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bki03032
]
M4486_08115 (dnaE)
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_08115 (dnaE)
Enzymes [BR:
bki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M4486_08115 (dnaE)
DNA replication proteins [BR:
bki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M4486_08115 (dnaE)
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M4486_08115 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
MCM10_OB
DUF655
Motif
Other DBs
NCBI-ProteinID:
UQN31232
LinkDB
All DBs
Position
complement(1706930..1710493)
Genome browser
AA seq
1187 aa
AA seq
DB search
MADDFVHLHVHTDYSLLDGAAKVDKLIDEVVRQDQKAIAITDHGYVFGAYEFYKTATAAG
VKPIIGVEAYVTPGTSRHDRTRVQWGTKAQQEAGDDVSARGAYTHLTLLSRSTEGMHNLF
RLASEASLDGQMGKWPRMDREILQKYSGGLIASTGCPSGEVQTRLRLGQWDEAVKAAGEF
QDMFGKENYFVELMDHGLDLEKRVTKELIELSKHIGAPLLATNDLHYVTEEDAKIQDALL
CINSGSTFDTPGRFKFGGSGYYLKSAREMRELFRELPEACDNTLKIAEMCEVSFTTTAEG
ANFMPVFPCPPGEDEHSWFIKEVQRGLEYRFPQGIPDDVKKQAEYETGIITQMGFPGYFL
VVSDFIKWAKENGIRVGPGRGSGAGSMVAYAMRITDLNPLEHGLLFERFLNPDRVSMPDF
DVDFDDRRRGEVIEYVTRKYGDDKVSQLVTFGVMKTKNSLKDASRVLGYPYAMGDMLSKA
LPPSVMGKDIPLSGIHDPEHKRYAEAGEFRRVVDENPDAQRVLEIAKGVEGLARGWGVHA
CGIIMSSHTLTDIIPIMRRPSDGQVITQFEYPECEALGLLKMDFLGLRNLTIVSDALDNI
GKNGKTAPDLETLEFDDPAPYTLLQRGDTAGVFQFDSAGYRELCRQMKPDKFGDISALGA
LYRPGPMGMNSHTNYALRKNGLQDITPIHPELEEPLQEVLSETYGLIVYQEQVMQIAQKV
AGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKERGYSAAAIKALWDTLLPFADYAFN
KSHSAAYGVVSYWTAYLKAHFPTEYMAALLTSTQENRDRLGFYLGDCRHHGITVLPPDVN
ESDMYFSAVGDDIRFGLSAIRNVGANVVEAILQAREEKGAFTSFTDFLDKVPLTVCNKRT
IESLIKGGAFDSLGANRRSLVLIHEDAVDSVVGVKRKEAQGQYDLFGSDLFGGGEEGDAA
SGSSATITIPEVPEWDRKEKLAFERNMLGLYVSDHPLHGLEHIIAQNSTTTISSLADDGA
IEDGTMVTIAGLITGLQRKTTKKGDMWAIATVEDLEGAIDCLLFPTTYQTVATELAEDLV
VSMKGRVDTSKGMPEMRVMEMTIPDTSSSMGTDGPVIITVPAARFTQRIAEDLRGVLEDN
RGMSEVRLKLQEPGRSTLMELDRRLAVSPSAALYASLKALLGPGCLH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacttcgttcacctccacgtccataccgactactcgttgctggacggggcc
gcgaaggtcgacaaactcatcgacgaggtggtccgccaggaccagaaggccatcgccatc
accgaccacggatatgtgttcggcgcctacgagttctacaagaccgcgacggccgccggc
gtgaagccgatcatcggcgtcgaggcctacgtgaccccggggaccagccgccacgaccgc
acccgcgtgcagtggggcacgaaggcccagcaggaggccggggacgacgtctccgcccgc
ggcgcctacacgcacctcaccctgctctcgcgctcgaccgagggcatgcacaacctgttc
cgcctggcctcggaggcctcgctcgacgggcagatgggcaagtggcctcgcatggaccgc
gagatcctgcagaagtactcggggggcctgatcgcctccaccggctgcccctcgggcgag
gtgcagacccgcctccggctgggccagtgggacgaggcggtgaaggccgccggcgagttc
caggacatgttcggcaaggagaactacttcgtcgagctcatggaccacggcctcgatctc
gagaagcgcgtgaccaaggagctcatcgagctctcgaagcacatcggcgcgccgctgctg
gcgaccaacgacctccactacgtcacggaggaggacgcgaagatccaggacgccctgctg
tgcatcaactcgggctccaccttcgacacccccgggcgcttcaagttcggcggttccggc
tactacctgaagtccgcccgcgagatgcgcgagctgttccgcgagctgcccgaggcctgc
gacaacaccctgaagatcgccgagatgtgcgaggtctccttcaccacgaccgccgagggc
gcgaacttcatgcccgtcttcccctgcccgcccggcgaggacgagcactcgtggttcatc
aaggaggtccagcgggggctcgagtaccgcttcccgcaggggatcccggacgacgtgaag
aagcaggccgagtacgagaccgggatcatcacccagatgggcttcccgggctacttcctc
gtcgtctccgacttcatcaagtgggccaaggagaacgggatccgcgtgggaccgggacga
ggctcgggcgccggctcgatggtcgcctacgccatgcgcatcaccgacctgaaccccctc
gagcacggcctgctgttcgagcgcttcctgaaccccgaccgcgtctccatgcccgacttc
gacgtcgacttcgatgatcgccgccgcggcgaggtcatcgagtacgtgacccgcaagtac
ggcgacgacaaggtctcccagctggtgaccttcggcgtcatgaagaccaagaactccctc
aaggacgcctcgcgcgtgctgggctacccgtacgcgatgggcgacatgctctccaaggcg
ctgccgccgtcggtcatgggcaaggacatcccgctctcgggcatccacgaccccgagcac
aagcgctacgccgaggccggcgagttccgccgcgtggtcgacgagaaccccgacgcgcag
cgcgtcctggagatcgcgaagggcgtcgagggcctggcccgcggctggggcgtgcacgcc
tgcgggatcatcatgtccagccacaccctgacggacatcatcccgatcatgcgtcgcccc
tcggacggccaggtcatcacccagttcgagtaccccgagtgcgaggcgctcgggctgctg
aagatggacttcctgggactgcgcaacctcacgatcgtctccgacgccctcgacaacatc
gggaagaacgggaagaccgccccggacctggagaccctcgagttcgacgaccccgcgccc
tacaccctgctccagcgcggcgacaccgcgggcgtgttccagttcgactccgccggctac
cgcgagctctgccggcagatgaagcccgacaagttcggcgacatctcggcgctcggcgcg
ctctaccgccccggcccgatgggcatgaactcccacacgaactacgccctgcgcaagaac
gggctgcaggacatcacccccatccaccccgagctcgaggagcccctgcaggaggtcctc
tccgagacctacggcctgatcgtctatcaggagcaggtcatgcagatcgcgcagaaggtc
gccgggtactcgctcggcgaggccgacatcctgcgccgcgcgatgggcaagaagaagaag
gcggagctggacaagcagtacgtctccttcgaggccggcatgaaggagcgcggctactcc
gccgccgccatcaaggcgctctgggacacgctgctgcccttcgccgactacgcgttcaac
aagtcgcactccgccgcctacggcgtggtctcctactggacggcctacctcaaggcgcac
ttcccgaccgagtacatggcggctctgctcacctccacccaggagaaccgcgaccgcctc
ggcttctacctcggcgactgccgccaccacggcatcaccgtgctgcctccggacgtcaac
gagtccgacatgtacttctcggccgtcggggacgacatccgcttcggactctccgcgatc
cgcaacgtgggtgcgaacgtcgtcgaggcgatcctgcaggcccgcgaggagaagggcgcc
ttcacgtccttcaccgacttcctggacaaggtcccgctcaccgtgtgcaacaagcgcacc
atcgagtccctcatcaagggcggcgccttcgactccctcggagccaaccgccgctcgctc
gtcctcatccacgaggacgccgtggactccgtggtcggcgtcaagcgcaaggaggcccag
ggccagtacgacctgttcggctccgacctcttcggcggaggcgaggagggagacgcggcc
tccggctcctcggcgacgatcacgatccccgaggttcccgaatgggaccgcaaggagaag
ctcgccttcgagcgcaacatgctgggcctgtacgtctcggaccacccgctgcacgggctc
gagcacatcatcgcccagaactcgacgaccacgatcagctccctggcggatgacggcgcg
atcgaggacggcacgatggtcacgatcgccggcctcatcacgggcctgcagcgcaagacc
accaagaagggcgacatgtgggcgatcgccaccgtcgaggacctcgagggtgcgatcgac
tgcctgctgttcccgaccacctaccagaccgtcgcgaccgagctcgccgaggacctcgtg
gtctccatgaagggtcgcgtcgacacctccaagggcatgcccgagatgcgcgtcatggag
atgacgatccccgacacctccagctcgatgggcaccgacggccccgtgatcatcaccgtg
cccgccgcccgcttcacccagcggatcgccgaggacctgcgcggcgtgctcgaggacaac
cgcggcatgagcgaggtgcggctgaagctccaggagcccggacgctccacgctgatggag
ctcgaccgcaggctcgcggtctcgccgtcggccgcgctctacgcctcgctcaaggctctg
ctgggccccggctgcctgcactga
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