Brachybacterium kimchii: M4486_15935
Help
Entry
M4486_15935 CDS
T08303
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bki
Brachybacterium kimchii
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bki03019
]
M4486_15935 (hrpB)
Enzymes [BR:
bki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M4486_15935 (hrpB)
Messenger RNA biogenesis [BR:
bki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M4486_15935 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_11
Cas3-like_C_2
AAA_19
AAA_25
HA2_N
ParA
DUF7471
Motif
Other DBs
NCBI-ProteinID:
UQN29101
LinkDB
All DBs
Position
complement(3505631..3508315)
Genome browser
AA seq
894 aa
AA seq
DB search
MTTPRPFDLAAIGAGLPVADAREELADAATTGALVVTAPPGTGKTTFVPPLVADLVPGRI
LVTQPRRVAVRAAARRIAQLDGSRLGERVGLTVRGERHVGPQTRLEVLTPGVLLRRLLAD
PELEGVDAVILDEVHERSLDGDLLLGMLAEVRALREDLTVVAMSATLDAAQVADLLGGAR
VVDVPAPLHPLRIAHEPGSAPRLDARGVTREFLDHLARITIEHRAEEDCDALVFVPGARE
VDELVRRIRSRAPDLEVLPLHGRLPAREQDRATRGRAPEEAGTDTPPPGHDLPGRVVVST
ALAESSLTVPGVRLVIDAGLSREVRRDRARDMTGLVTVSASRASANQRAGRAARQGPGLA
VRAYSATDDARMPAISPPEIASADLTDAALLVAAWGSPWAAPGEPGTGTGADPTLLPGLP
LLTPPPGASAARAVEVLAGLGLIDADGRANALGRRVARLPVGVREARALLEGAERLAAPE
AVAEVIAAISDDHRAPDADLPRLLRDLRAGRAPGADRWRREVTRLRRIAEGAQARNDTAP
SPAGASGLPHDLPGQVLALARPERIARLTATGARSYLLAGGTRAALPEGSGLSGSDWLAI
AEVQRADGRAADGTGAVIRSAAPLEEDSALELAGPLLRATRRARLEGGKVSVREERALGA
IVLRATPVAATADDVGPARAAHLREHGLDALTWNAPARSLRSRLALIHRELGDPWPAMDD
ASLLASLETWLLPDLLRLRPDAPLSRLDLTTALRRLLPWPEAARLDQLAPERLAVPSGST
ARIDYPDASAATGSSDSTAADGSGRPVVAVKLQELFGLAETPRLVDGRVPVLFHLLSPAR
RPLAVTDDLRSFWDGPYQEVRKEMRGRYPKHPWPEDPWTAPATARTARRQEGRH
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgccccgtcccttcgacctcgcggcgatcggcgccggtctgcccgtcgccgac
gcgcgcgaggagctcgccgacgccgcgacgaccggtgcgctcgtggtcacggcgccccca
ggcaccggcaagaccaccttcgtgccgccgctcgtggcggacctcgtgcccggccgcatc
ctggtcacccagccgcggcgcgtcgccgtgcgcgccgccgcgcgtcggatcgcgcagctc
gacggctcgcgcctcggcgagcgcgtgggcctcaccgtgcgcggggagaggcacgtcggc
ccgcagacgcgtctcgaggtcctcaccccgggcgtcctgctgcgccggctgctcgcggat
cccgagctcgagggcgtggacgcggtgatcctcgacgaggtgcacgagcgctcgctcgac
ggcgatctgctgctgggcatgctcgccgaggtgcgggctctgcgggaggatctcacggtg
gtcgcgatgtcggcgacgctcgatgccgcgcaggtcgcggacctgctgggcggggcgcgc
gtggtcgacgtccccgctcccctgcacccgctgcgcatcgcgcacgagcccggcagcgcc
cctcggctcgacgcccgcggcgtgacccgggagttcctggaccatctcgcgcgcatcacc
atcgagcaccgggccgaggaggactgcgacgccctcgtgttcgtgcccggcgcccgggag
gtcgacgagctggtgcgcaggatccgctcgcgcgcccccgatctcgaggtgctgcctctg
cacggccgtctgcccgcgcgcgagcaggaccgggccacgcgcgggcgggcaccggaagag
gcagggaccgacaccccaccaccgggacacgacctgccgggccgcgtcgtcgtctccacc
gctctcgccgagagctccctgacggtgcccggcgtgcgcctcgtgatcgacgcggggctc
tcccgggaggtccgacgggaccgggcgcgcgacatgacgggcctggtcaccgtgagcgca
tcacgcgcgagcgcgaaccagcgggcgggccgagctgcccgccagggaccgggcctcgcg
gtgcgcgcctactcggcgacggacgacgcgcggatgcctgcgatctccccgcccgagatc
gcctcggcggacctcacggacgcggccctgctggtcgcggcgtgggggtcgccgtgggcg
gcgccgggcgaacccgggacggggacgggggccgatcccaccctgctccccggtctgccg
ctgctcactcccccgcccggggcctccgcggcgcgggccgtcgaggtgctcgcgggcctg
gggctcatcgacgccgacggcagggcgaacgcgctgggcaggcgggtcgcccgcctgccc
gtcggcgtgcgggaggcgcgcgccctgctcgagggcgccgaacgcctcgccgcacccgag
gccgtcgcggaggtgatcgccgcgatctccgacgaccatcgcgcgcccgacgcggacctg
ccgcgtctgctgcgcgatctgcgcgcgggccgcgcaccgggcgcggaccgctggcggcgc
gaggtcacccgcctgcgccggatcgccgagggcgcgcaggcgaggaacgacaccgccccg
tcgcccgccggcgcctcgggcctcccgcacgacctcccgggtcaggtcctcgcgctcgcg
cggcccgagcggatcgcacgcctcaccgcgaccggagcacgcagctacctgctcgccggc
ggcacgcgcgccgccctgccggagggctccggcctcagcggcagcgactggctcgcgatc
gcagaggtgcagcgggccgacgggcgcgccgcggacgggacgggcgccgtcatccgctcc
gccgccccgctcgaggaggactcggcgctcgagctcgccggcccgctgctgcgcgcgacg
cgccgggcacggctcgagggcgggaaggtctcggtgcgcgaggagcgcgcactgggcgcg
atcgtgctgcgcgcgacgccggtggccgccacggcggacgacgtcggccccgcccgcgcc
gcccacctccgggagcatggtctcgatgctctgacctggaatgctcccgcacggagcctg
cgctctcggctcgccctgatccatcgtgagctcggcgatccgtggccggcgatggacgac
gcctcgctgctcgcctccctcgagacctggctgctgccggacctgctgcgactgcgtccg
gacgccccgctctcccgcctcgacctcaccaccgcgctgcggcgcctgctgccctggccg
gaggccgcgcggctggaccagctcgccccggaacggctcgcggtgccgtcgggttcgacc
gcccggatcgactatcccgacgcgtcggccgcgacgggatcatcggattcgaccgcggcg
gacggatcgggaaggcccgtggtcgcggtgaagctgcaggagctcttcggcctcgccgag
acgccgcgcctggtcgacggacgcgtgcccgtgctcttccacctgctctcccccgcgcgc
aggccgctcgccgtcaccgacgacctgcgctccttctgggacggcccctaccaggaggtc
cgcaaggagatgcgcgggcgctaccccaagcatccctggcccgaggacccctggaccgct
cccgccacggcccggaccgcgcggcgccaggaagggcgtcactga
DBGET
integrated database retrieval system
