Brachybacterium kimchii: M4486_19440
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Entry
M4486_19440 CDS
T08303
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bki
Brachybacterium kimchii
Pathway
bki03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bki00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M4486_19440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bki03021
]
M4486_19440
03400 DNA repair and recombination proteins [BR:
bki03400
]
M4486_19440
Enzymes [BR:
bki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M4486_19440
Transcription machinery [BR:
bki03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M4486_19440
DNA repair and recombination proteins [BR:
bki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M4486_19440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UQN29773
LinkDB
All DBs
Position
4280439..4284326
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNTFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEMDGLFCERIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHVELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITAVDEDARHEDLPDLQARYDLEVKELANERDAAINDRAVSAEQD
LAKLEEEGAKADAKRKVRDSSEREQAQIRKKYDAEIARVTAIWDRFKSLKVADLEGDEQL
YRAMKLRYGTYFEGGMGAEAIQQRLRDFDLEAEAASLREIIANGKGQKKARALKRLKVVT
AFRSTTNSPEGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVNGPQLHLHQCGLPKGMALELFKPFVMKRLVDLSHAQNVKAAKRMVERAR
PEVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPAQDMIIGLYHLTTVREDAEGAGR
SFSSIAEAIMANDGGDLELNAPVRIRFEDVVPPRGWEAPEGWTEGDPITLETTLGTVYFN
ETLPVDFPYVEGQVGKKRLGGIVNELAERYEKGQVAASLDALKSYGFSWSTRSGVSFAFS
DVIAPEDKQEILSKYEEQAARIQENRDLGLVSEAERNAELIDVWSKATNEVDASMQKNFE
ETPTNSIYRMVNSGARGNWMQIRQIAGMRGLVTNPKGEIIPRPILSNYKEGLSVLEYFIA
SHGSRKGLADTALKTAQSGYLTRRLVDVSQDVIVRESDCGTSKGLTLQIASEEAGALVPD
ENIETTAYGRTLATAALDPEGNEVAAAGSDVGDVLIGQLVAAGVREIKVRSVLTCDSAVG
TCALCYGRSLATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVASADGDITHGLPR
VQELFEARTPAGFAPITESAGRVEIEENEKQRRLTVTPDDGTDPVTYNVPRRVSLLVADG
DHVEVGQQLSQGSVDPKQVLRILGPRAVQKHLVDEVQKVYISQGVDIHAKHIEVIVRQML
RRVTIIESGDTDLLPGDFADRITFERENRRVLSEGGQPASGRPELMGITKASLATDSWLS
AASFQETTRVLTEAALNRKSDQLMGLKENVIIGKLIPAGTGLPRFRRISVEPTDEAKAQM
YQVPGYDELDFSGYGAGAVNLDDIDYSDPFRSDFR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacaccttcgacgagctgcgcatcggcctcgcgaccgcggacgatatc
cgcacctggtcccatggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagatggacggcctgttctgcgagcgtatcttcggtccaacccgggactgggagtgc
tactgcgggaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtgcgccgtgagcgcatgggccacgtggagctcgccgccccg
gtgacccacatctggtacttcaagggcgtgccgagccgcctcggctacctgctggacctg
gcgcccaaggacctcgagaaggtcatctacttcgccgcgtacatgatcaccgcggtcgac
gaggacgcccgccacgaggacctgcccgacctgcaggcccgctacgacctcgaggtcaag
gagctcgcgaacgagcgcgacgcggccatcaacgaccgcgccgtctccgccgagcaggac
ctcgccaagctcgaggaggagggtgccaaggccgacgcgaagcgcaaggtccgcgactcc
tccgagcgcgagcaggcgcagatccgcaagaagtacgacgccgagatcgcccgcgtcacc
gcgatctgggaccgcttcaagagtctcaaggtcgcggacctcgagggcgacgagcagctg
taccgcgccatgaagctgcgctacggcacgtacttcgagggcggcatgggcgccgaggcg
atccagcagcgcctgcgcgacttcgacctcgaggccgaggcggcctcgctgcgcgagatc
atcgccaacggcaagggccagaagaaggcccgtgcgctcaagcgcctcaaggtcgtcacc
gcgttccggtccaccaccaactcgcccgagggcatggtgctcgactgcgtcccggtgatc
cccccggacctgcgtccgatggtgcagctggacggcggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctcaagcggctgctcgatctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtcggtggactcg
ctgttcgacaacggccgccgcgggcgtccggtgaccggcccgggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggactactcgggccgctcggtcatcgtgaacggtccgcagctccacctgcaccag
tgcggtctgcccaagggcatggccctcgagctgttcaagcccttcgtcatgaagcgcctc
gtggatctctcccacgcgcagaacgtgaaggccgccaagcggatggtcgagcgcgcgcgc
cccgaggtctgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctgggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccacctgcacccgctcgtgtgcgccgccttcaacgcggacttcgacggcgaccag
atggcggtccacctgcccctgagcgccgaggcgcaggccgaggcccgcatcctcatgctc
tcgagcaacaacatcctcaagccctcggacggccgtccggtgaccatgcccgcgcaggac
atgatcatcggtctgtaccacctgacgacggtccgcgaggacgccgagggcgccggccgc
agcttctcctcgatcgccgaggcgatcatggcgaacgacggcggcgacctcgagctcaac
gcgcccgtgcgcatccgcttcgaggacgtcgtgccgccgcgcggctgggaggcccccgag
ggctggaccgagggtgacccgatcacgctcgagaccacgctcggcacggtctacttcaac
gagaccctgcccgtggacttcccctacgtggagggccaggtcggcaagaagcgcctgggc
gggatcgtcaacgagctcgccgagcgctacgagaaggggcaggtcgccgcgtcgctcgac
gcactcaagtcctacggcttctcgtggtcgacccgcagcggcgtctccttcgccttctcc
gacgtcatcgcgccggaggacaagcaggagatcctctcgaagtacgaggagcaggccgcc
cgcatccaggagaaccgcgacctcggtctggtctccgaggcggagcgcaacgccgagctg
atcgacgtctggtccaaggcaaccaacgaggtcgacgcctccatgcagaagaacttcgag
gagaccccgaccaactccatctaccggatggtgaactcgggcgctcgaggcaactggatg
cagatccgtcagatcgccggcatgcgcggtctggtgacgaacccgaagggcgagatcatc
ccgcgcccgatcctctccaactacaaggaggggctctcggtcctggagtacttcatcgcc
tcgcacggctcccgcaagggcctcgcggacacggcgctgaagaccgcccagtcgggctac
ctcacgcgtcgtctggtcgacgtctcgcaggacgtgatcgtccgcgagtccgactgcggc
acgtccaagggcctgaccctgcagatcgcctcggaggaggccggtgcgctggtccccgac
gagaacatcgagaccactgcgtacgggcggaccctggcgaccgcggccctcgaccccgag
ggcaacgaggtcgccgcggcgggctcggacgtgggcgacgtgctcatcggccagctggtc
gccgccggcgtccgcgagatcaaggtgcgctccgtgctcacctgcgattccgcggtcggc
acctgcgccctgtgctacggccgctcgctcgcgaccggccagctcgtggacatcggcgag
gccgtcggcatcgtcgcggcccagtcgatcggcgagcccggcacgcagctgaccatgcgc
accttccacaccggtggtgtggccagcgccgacggcgacatcacgcacggtcttccgcgt
gtgcaggagctcttcgaggccaggaccccggccggcttcgcgccgatcaccgagtccgcg
ggccgcgtggagatcgaggagaacgagaagcagcgtcgtctgacggtcacccccgatgac
ggcaccgacccggtcacctacaacgtgccgcgtcgcgtcagcctgctggtcgccgacggc
gaccacgtcgaggtcggccagcagctctcccagggctcggtcgatcccaagcaggtgctg
cgcatcctcggcccccgtgcggtgcagaagcacctcgtggacgaggtccagaaggtgtac
atcagccagggcgtggacatccacgccaagcacatcgaggtcatcgtgcgccagatgctc
cgtcgcgtgacgatcatcgagtcgggcgacacggatctgctgcccggcgacttcgcggac
cgcatcaccttcgagcgcgagaaccgtcgtgtgctctccgagggcgggcagccggcatcc
ggccgtcccgagctcatgggcatcacgaaggcctccctcgcgacggactcgtggctctcg
gccgcctccttccaggagacgacccgcgtgctcaccgaggccgccctgaaccgcaagagc
gaccagctcatggggctcaaggagaacgtgatcatcggcaagctgatccccgccggcacc
gggctgccccggttccgtcggatctcggtcgagccgacggacgaggcgaaggcgcagatg
taccaggtgccgggctacgacgagctggacttctccggctacggcgcgggcgcggtcaac
ctcgacgacatcgactactcggatcccttccgcagcgacttccgctga
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