Bacillus kandeliae: WDJ61_02920
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Entry
WDJ61_02920 CDS
T10863
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bkn Bacillus kandeliae
Brite
KEGG Orthology (KO) [BR:
bkn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bkn03009
]
WDJ61_02920 (rlmD)
Enzymes [BR:
bkn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
WDJ61_02920 (rlmD)
Ribosome biogenesis [BR:
bkn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
WDJ61_02920 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
MTS
Methyltransf_11
Cons_hypoth95
RrnaAD
Methyltransf_4
PCMT
Methyltransf_32
Ubie_methyltran
TPMT
N6_Mtase
Methyltransf_12
N6_N4_Mtase
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WXB94814
LinkDB
All DBs
Position
535878..537254
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AA seq
458 aa
AA seq
DB search
MVAKIQAPVQKNEIIDVVFEDLTHDGQAVAKIEGYPLFVAGALPGEKGSIQATKLNKGYG
FGRLIELKETSPFRQEPECPIYSQCGGCQLQHLSYEGQLQAKEKQVRDVMERIGKLEDVT
IHPVLGANDPWRYRNKAQVPVGEENGGLVAGFYQKRSHSIINMEQCLIQHEKSDEVIQKV
RAICDRYGIKAYDEAKHKGTLRHIMARYGKITGEVMVVLVTRTEDFPNKKKIIEEITEQI
DGVTSIIQSINSKKTNVILGDTTKVLWGNEVIYDYIGDIKFAISARSFYQVNPEQTKVLY
DKALEYANLTGEEQVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDANRNAELNGITN
VEFAVGEAETVIPDWYKQGITADVLVVDPPRKGCDETLLQTIIDMKPKKVVYVSCNPATL
ARDLRVLEDGGYKTVEIQPVDMFPMTTHCESVAWLELV
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atcgtggcaaaaattcaagcccctgtgcaaaaaaatgaaatcattgatgttgtattcgaa
gacttaacgcatgacggtcaagccgtcgctaaaattgaaggttatccattattcgtggca
ggtgcactgcctggcgaaaaaggaagcattcaagcaacgaaactcaataaaggctacggc
tttggccgtttgatcgaattaaaagaaacaagcccgtttagacaagagccagaatgtcct
atttactcgcaatgcggcggctgtcagcttcagcacttatcatacgaaggccagctacag
gcgaaggaaaaacaagttcgcgacgtgatggagcgaatcggcaagctagaagatgtaacc
attcaccccgtactcggtgcgaatgatccatggcgttaccgcaataaagcgcaagtgccg
gtcggtgaagaaaacggcggcttagtcgcaggattttatcaaaaacggagccattccatc
attaatatggaacaatgcctcatccagcacgaaaaaagtgatgaagtcattcaaaaagta
agagccatttgcgaccgctacggcatcaaagcctatgatgaagcaaaacataaaggcacg
ctccgccacatcatggctcgctacggcaaaataacaggagaagtcatggtcgtgttagtc
acacgcacagaagacttcccaaataaaaagaagatcatcgaagaaatcaccgaacaaatc
gacggtgtcacatcgatcatccaaagcatcaactcgaaaaaaacaaacgtcatccttggt
gacacaacaaaagttctctggggcaacgaagtcatttacgactacatcggtgatattaaa
ttcgccatctcggcacgatctttttatcaagtcaacccagaacaaacgaaagttctttat
gacaaagcgttagaatacgccaacttaacaggagaagaacaagtcattgacgcctactgc
ggcattggcacgatctccttattcttagcgcaaaaagcgaagaaagtatacggtgtagaa
attgtccctgaagccatcgaagacgccaaccgcaacgccgaattaaacggaatcaccaac
gtcgaattcgctgtcggagaagcggaaaccgttattcctgactggtataaacaaggcatt
accgctgatgtcctcgttgtcgacccgccgagaaaaggctgtgacgaaacgttactgcaa
acaatcattgatatgaagccaaagaaagtcgtgtatgtttcttgtaacccggcgacattg
gcacgagatttaagagtgttagaagatggtgggtataagacagtggagatccagccggtg
gatatgtttccgatgactactcattgtgaatcggtggcgtggttggagttggtataa
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