Cytobacillus kochii: CKF48_00325
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Entry
CKF48_00325 CDS
T05194
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bko
Cytobacillus kochii
Pathway
bko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKF48_00325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bko03019
]
CKF48_00325
Messenger RNA biogenesis [BR:
bko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKF48_00325
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
MMS22L_C
Motif
Other DBs
NCBI-ProteinID:
ASV69909
UniProt:
A0A248TP65
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Position
complement(66182..67780)
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AA seq
532 aa
AA seq
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MYIIEVDEDLFVIDAGLMLPENEMLGIDTVIPDFTYLIQQKDRVQGVFLTHGHEDHIGAL
SYLLRQIEAPVYGTKLTIALAKAKMKEQGFKGKAKLVEIHSDTELHFDHCEISFFKTNHS
IPDSVGVCIHTSQGSIVYTGDFKFDQAAGPLYKAEIGKMAKIGENGVLCLLSDSTEAEKP
GYTKSEAEVLDDLVKHFYQAKGRVVVATFASELIRIQQVFDAAKQTNRKVAIVGRSLQKI
YDIAIRLGFLDIYEDVMVSMNDVKNLADEEIIYLVTGTQGEPIDALYKMAKNSHRQVHIQ
SGDYVIFFASPLRGSEVYLSKTVDVLFRGGAHVVSGKGSFNTSSHGSKEELKFMINLMNP
RYFFPVHGEYRMLKAHAKVAESTGMESEAIFIPEKGELYEIAKGTMKNVGKIPTGHVLID
GSGVGDVGNIVLRDRKLLSQDGILLVVVTLNKKQKIISAGPEIITRGFVYVRESEELLAE
ASKLVKEIVEAKLSKEAFDWSGIKQDMREGLNQFLFDKTKRRPMILPIIMES
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtacataatcgaagttgatgaggatttattcgtaatcgatgcaggtttaatgcttcca
gagaacgaaatgcttggaattgatacggttattccagatttcacctatcttattcaacaa
aaagatcgtgtgcaaggagtatttttaacccacggacatgaagaccatattggagcttta
tcttatttgcttcgtcaaattgaggccccggtatacggaactaagcttacgattgcgtta
gcaaaagcaaaaatgaaagagcaaggatttaaagggaaagctaaactagtggaaatacat
agtgatactgaactacactttgatcattgtgaaatttcattttttaaaacaaatcatagc
atcccagacagtgttggggtatgtattcatacctcacaaggcagtatcgtctacactggg
gattttaaatttgaccaagcggctggcccactttataaagccgaaattggaaaaatggct
aaaatcggagaaaatggcgttttgtgcttattatctgatagtacagaagcagaaaagccg
ggctacacaaaatctgaagctgaagtattagatgatttagtgaagcatttttatcaagca
aaagggagagtcgtagtagctacatttgcgtctgagttaattaggattcaacaagtattt
gacgctgcgaaacagactaaccgaaaagtagcaatagtaggaagaagtttgcaaaaaata
tatgatattgccatcagattagggtttttggatatttatgaagacgtaatggtttctatg
aacgatgtgaaaaacttggcagatgaagaaatcatttatttagtgacaggtacgcaagga
gagccaattgatgcgctgtataagatggcgaaaaactctcaccgtcaagtgcatattcaa
tctggagattatgtgatattctttgcttctcctttgagaggttcggaagtttatttatca
aaaacagttgatgtattgttcaggggcggagcacatgtggtctcaggtaaagggagtttt
aatacatctagtcatggtagcaaagaagagcttaaattcatgattaatttaatgaatccg
agatatttctttcctgttcatggagaatataggatgttaaaggcacatgcaaaagtagct
gagtcgactggtatggaaagtgaagctatttttattcctgaaaagggagaattatatgaa
atagcaaaaggaaccatgaaaaatgtggggaaaatcccaaccggacatgtattaattgat
ggcagtggtgtaggtgatgttggtaatattgtccttagagatcgtaagttattatctcaa
gatggaatattacttgtggttgttacgttaaacaaaaaacaaaaaatcatttcagcagga
ccagaaattattacaagaggctttgtttatgttagagaatctgaagaattacttgcagaa
gcaagcaaattggtaaaagaaattgttgaagccaaactatcgaaagaagcttttgactgg
tcaggtatcaaacaagatatgagagaaggtctcaatcagttcttatttgataaaacaaaa
cgtcgtccgatgatcttaccgataattatggagtcctaa
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