Cytobacillus kochii: CKF48_07965
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Entry
CKF48_07965 CDS
T05194
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bko
Cytobacillus kochii
Pathway
bko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKF48_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bko03019
]
CKF48_07965
03009 Ribosome biogenesis [BR:
bko03009
]
CKF48_07965
Enzymes [BR:
bko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKF48_07965
Messenger RNA biogenesis [BR:
bko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKF48_07965
Ribosome biogenesis [BR:
bko03009
]
Prokaryotic type
rRNA helicases
CKF48_07965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NDK
Motif
Other DBs
NCBI-ProteinID:
ASV67258
UniProt:
A0A248TGD1
LinkDB
All DBs
Position
complement(1577546..1579027)
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AA seq
493 aa
AA seq
DB search
MTKFQDLGISPETMKSLKRMGFEEATPIQAETIPLSLQNKDLIGQAQTGTGKTAAFGIPM
IDHIDYNDSFIQGLVIAPTRELAIQVSEELYKLGFGKRTRVLSIYGGQDINRQIRALKNR
PHIIVGTPGRILDHINRKTLKLDHVKKVILDEADEMLNMGFIDDIEKILSSVPEEKHTLL
FSATMPPAIQRIAERFMKEPQIVRVKAKEMTVPLIEQYYIEVQEKNKFDVLTRLLDIQSP
ELAIVFGRTKRRVDELSEALSLRGYNAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAMTFINPREKSYLRIVEKTTK
KKMERMAAPTLDQALEGQQKAVAEKVEQIIEDNHLQYYQQSAQQLLEHHDATTVVQALLK
LMIKEPDTTPVKLTEEKPLPAKRDRRSTDRSNRPRGGYSPKGRQSNSYRSRDGKPSGKRN
YQGNKKTNANSYR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgactaagtttcaagatttgggtataagccctgaaacaatgaagtctcttaaaagaatg
gggtttgaagaggcaactccgattcaagcagagacgattcctttaagcttgcagaataag
gacttaattggacaagcacaaacaggtacaggtaaaacagccgcttttggtattcctatg
attgaccatattgactataatgatagttttattcaaggtttagtcatcgcgccgacaaga
gaattagccattcaagtgtcagaggaattatacaaactcggttttgggaaaagaacgaga
gtgttatcgatttatggtggccaagatattaaccgtcaaatacgagcgttaaaaaatcgt
cctcatattattgtcggtacacctggaagaattcttgatcatattaatcgaaaaacacta
aaattagatcatgtcaaaaaagtgattttagacgaagctgatgaaatgttaaatatgggc
tttattgatgatattgaaaaaatcttatcaagtgtcccagaagagaagcatactttactc
ttctctgcgacgatgccaccagccattcaacgtattgctgagcggtttatgaaagagcca
caaatcgttcgagtaaaagcgaaggaaatgactgtaccactcattgagcaatattatatt
gaagtacaagaaaaaaataaatttgatgtgttaacaagactgcttgatattcaatcacca
gaacttgcgattgttttcggacgtacgaaaagaagggttgatgaactttctgaagcctta
agtttaagaggttacaatgcagaaggaatacatggtgacttgagccaggctaaacgtatg
tctgtccttcgtaagtttaaagaagggtccattgatgtccttgtcgcaacagatgtagca
gctcgtggattagatatttctggtgttacacatgtgtataactttgatataccacaagat
ccggaaagttatgttcaccgtattggtcgaacaggtcgtgctggtaaagaaggaatggcc
atgacatttattaacccacgtgagaaatcatacttacgtatcgttgaaaaaacaacgaaa
aagaaaatggaaagaatggctgctccgacgttagatcaagcattagaggggcaacaaaag
gctgttgcagaaaaagtcgagcaaatcattgaggataatcatcttcaatattatcaacaa
tctgcacaacaattacttgaacaccacgacgcaacaacggtagttcaagcattgttgaag
ctcatgatcaaagaaccggacacgactccggtaaaactaacagaagagaaacctttaccg
gctaaacgagacagaagatccacagatagaagtaaccgtcctagaggtgggtatagcccg
aaaggaagacaaagtaactcctatcgctcccgtgatggtaaaccttcaggtaaaaggaat
tatcaaggaaataagaaaacaaatgcaaatagctatagataa
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