Cytobacillus kochii: CKF48_09990
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Entry
CKF48_09990 CDS
T05194
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bko
Cytobacillus kochii
Pathway
bko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKF48_09990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bko03021
]
CKF48_09990
03400 DNA repair and recombination proteins [BR:
bko03400
]
CKF48_09990
Enzymes [BR:
bko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKF48_09990
Transcription machinery [BR:
bko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKF48_09990
DNA repair and recombination proteins [BR:
bko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKF48_09990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ASV67624
UniProt:
A0A248THD0
LinkDB
All DBs
Position
complement(1932322..1933266)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVEISDDAKYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG
VLHEFSTIEGVVEDVTSIILNIKKLALKIYSDEEKTLEIDVQSEGVVTAADVTHDSDVEI
LNPDLHIATLGSNGHLHMRLTAKRGRGYTPAVQNKKEDQPIGVIPIDSIYTPVSRVQYQV
ENTRVGQLSNFDKLTFDVWTDGSTGPQDAVALGAKILTEHLNIFVGLTDEAQNAEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK
HKLEELGLGLRKDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaatagaaaaaccaaaaatcgaaacggttgagatcagcgatgatgctaagtat
ggtaagttcgtcgtagaaccacttgagcgtggatatggaacaactttgggtaactcctta
cgtcgtatcctattatcctcactcccaggtgccgctgtcacttcgatccaaattgatggg
gtacttcatgagttctcaacaattgaaggcgtcgtagaagatgtaacatctatcatttta
aacattaaaaagctcgcattgaaaatctattctgatgaagaaaaaacattagaaattgac
gttcaaagcgaaggtgtagttactgctgcagatgtaacacatgatagtgatgtagagatt
cttaatccggatcttcatattgctactcttggttcaaatggtcatttgcatatgcgtcta
actgctaaacgtggtcgtggttatacaccagctgttcaaaacaaaaaagaagatcaacca
atcggtgtaattcctattgattctatttatacgccagtttcacgcgtacaatatcaagtt
gagaatactcgtgttggtcaattgagtaattttgataaattgacttttgatgtttggact
gacggaagtactggccctcaagatgcagttgcacttggagcgaagatcttaactgagcat
ttgaatatctttgttggtttaactgatgaagctcaaaatgctgaaattatggttgaaaaa
gaagaagaccaaaaagaaaaagtccttgaaatgacaattgaagaactagatttatctgtt
cgttcatacaactgcttaaaacgtgcaggcattaacactgttcaggagttagctaataaa
actgaagaagatatgatgaaagtacgtaacttaggtaggaagtctctagaggaagtaaaa
cataaactagaagagcttggattaggtttgcgtaaagacgactga
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