Cytobacillus kochii: CKF48_10170
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Entry
CKF48_10170 CDS
T05194
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bko
Cytobacillus kochii
Pathway
bko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKF48_10170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bko03021
]
CKF48_10170 (rpoC)
03400 DNA repair and recombination proteins [BR:
bko03400
]
CKF48_10170 (rpoC)
Enzymes [BR:
bko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKF48_10170 (rpoC)
Transcription machinery [BR:
bko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKF48_10170 (rpoC)
DNA repair and recombination proteins [BR:
bko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKF48_10170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASV67660
UniProt:
A0A248THT9
LinkDB
All DBs
Position
complement(1957616..1961212)
Genome browser
AA seq
1198 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTESGDTALEKKQLLSEKEYRAYREKYGNKFQASMGAESIRKLLS
DIDLDKEVDTLKEELKTAQGQRRTRAIKRLEVLEAFRGSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIEKVHPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAVGEGMVFNDTSEALLAYQNGYVHLHTRVAVH
AGSLKNETFTEEQNKQLLMTTVGKLVFNEILPKTFPYINEPTKENLEIETPKKYFIDKAI
DIPEAIRTMPIVDPFKKKILGNIIAEVFKRFKITETSKMLDRMKNLGFKYSTKAGITVGV
ADIVVLGEKEEILHEAQNKVDNVLKQFRRGLITEEERYDRVISIWSAAKDNIQSKLMKSL
DKSNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLISSLKEGTEVIESLE
ERLIGRHVRKAIRHPETNEIIARENELITEDLSAEIIAAGVEEAWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIKGTVVGINEGRDRQHEIVIQGEVESRTYTAPYTARLKVAINDEVER
GQELTEGSIDPKELIKVRDVTAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAAETDVLPGTLLDIHQFTDANRKALMEGKMPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQAEPYTKEAVEETITVE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgttaataatttcgagtatatgaaaataggtctcgcttcaccagataaaatc
cgctcatggtctcatggtgaagtaaagaaacctgaaacaatcaattatcgtacattaaaa
cctgaaaaagatggtttgttttgtgaacgtattttcggtccaacaaaggactgggagtgt
cattgcggtaaatacaaacgcgttcgttataaaggtgttgtttgtgatcgttgtggtgtt
gaagttacacgtgctaaagttcgtcgtgaaagaatggggcatattgagctagcagcgcca
gtatcacatatttggtactttaaaggtattccaagccgtatgggtcttgttcttgatatg
tctcctcgtgcattggaagaagtaatttattttgcatcttatgttgtaaccgaatccgga
gatacagcattagagaaaaaacaattgctctctgaaaaagaataccgtgcttaccgtgaa
aaatacggtaataagttccaagcgtctatgggtgcggagtcaattagaaagttactttca
gatattgaccttgataaagaagtagatactttaaaagaagaattaaaaactgcacaaggg
caacgccgtacacgtgcaattaaacgattagaagtgcttgaagcattccgtggttcagga
aatgaaccgagctggatgattcttgatgtgctaccagttattcctccagagcttcgtcca
atggttcaactagacggtggtcgctttgctacatcagatttgaatgacctttatcgccgt
gtaattaaccgtaataaccgtttgaaacgtttattagaccttggtgctccaagcatcatc
gttcaaaatgaaaagcgtatgcttcaagaagctgttgacgctttaattgataacggtcgt
cgtggacgtcctgttacaggtcctggtaatagaccacttaaatcactatctcatatgtta
aaaggtaaacaaggacgtttccgtcaaaacttgctcggtaaacgtgttgactactctggg
cgttctgtaattgtcgttggtccaaacttgaaaatgtatcaatgtggactacctaaagaa
atggcattggagttatttaaaccatttgtcatgaaagagttagttgaaaagggcctagca
cataacattaaatcagctaaacgtaaaatcgaaaaagttcaccctgaagtttgggatgta
cttgagagtgtcattaaggagcatccggtattattaaaccgtgcccctacacttcataga
ttagggattcaagcatttgaacctacgttggttgaaggacgtgccattcgcctgcatcca
cttgtttgtacagcatataatgctgactttgatggtgaccaaatggcggttcacgtacct
ttatcagcagaagcgcaagctgaagctagattgcttatgttggcagcacaaaacatcctg
aatcctaaggatggtaaaccagttgttacgccttcacaagatatggtgttaggtaactat
tacttaactttagaaagagaaaatgctgttggtgaaggaatggtctttaacgacacaagc
gaggcgttacttgcttaccaaaacggatatgttcacttgcacacaagagtagctgttcat
gctggttcgttaaaaaatgaaacattcactgaagaacaaaacaagcaactattaatgaca
acagttggtaaattggtattcaatgaaattttaccgaaaacattcccgtatattaacgaa
ccaacaaaagagaatcttgaaattgaaacaccgaagaaatactttattgataaagctatt
gatattcctgaagcgattcgtacaatgccgattgtcgatccatttaagaagaaaattctt
ggaaatatcattgctgaagtatttaaacgcttcaagattactgaaacatcaaaaatgcta
gaccgcatgaagaatttaggtttcaaatattcaactaaggctggtattaccgttggtgtg
gcagacatcgttgtattaggtgaaaaagaagaaattcttcatgaagctcaaaataaagtt
gataatgtattaaaacaatttagacgtggtcttattactgaagaggaacgttatgacaga
gttatctctatctggagtgcggcgaaagataatatccaatcgaaactaatgaaatcattg
gataaatccaacccaatcttcatgatgagtgattcaggtgcccgtggtaacgcatctaac
tttacacagttagctggtatgcgtggtctaatggccaacccggctggtcgtattattgaa
ttaccgattaaatcaagttttcgtgaaggattaactgtattagagtactttatctctact
cacggtgcgcgtaaaggtcttgctgatacagcccttaaaacagctgactctggttacctt
actcgtcgtcttgttgacgttgcacaggacgtaattgtacgtgaagatgattgcggtaca
gatcgtggattattgatttcttccttgaaggaaggaacagaagtgatcgaaagcttagag
gaacgtttaatcggtcgtcatgtaagaaaagcgattagacatccggaaacaaatgaaatc
attgcacgtgaaaatgaattgattactgaagatttatctgcagaaatcatcgctgcaggc
gttgaagaagcatggattcgctctgcgttcacatgtaatactcgccacggtgtatgtaaa
aaatgttacggacgtaacttggctactggtcaagaagttgaagtcggtgaagcagttggt
attattgccgctcaatcaattggtgaacctggtacacagttaacgatgcgtactttccat
actggtggggttgcaggagacgatattacacaaggtcttcctcgtatccaagagattttt
gaagcgcgtaaccctaaaggtcaagcggttatttcagaaatcaaaggtacagtggttggc
attaatgaaggtcgcgatcgtcaacatgaaatcgttattcaaggtgaagttgaatcacgc
acttatactgcaccttatactgcacgcttaaaagtagcaattaacgatgaagtggaacgc
ggtcaagagctaacagaaggttctatcgatccgaaagaattaattaaggtgagagatgtt
acagctgttcaagaatacttgctacgagaagtacaaaaagtttatcgtatgcaaggggtt
gaaatcggtgataaacacgtcgaagtaatggtacgtcaaatgcttcgtaaagtacgtgtt
atcgatgcagctgagacagatgtacttccaggcacattgcttgatatccatcaatttact
gatgcgaatagaaaagcacttatggaaggtaaaatgccagctactggacgtccggtatta
cttggtattacaaaagcatctcttgaaactgattccttcttatccgctgcttcattccaa
gaaacaactagagttcttacagatgcagcgattaaaggaaaacgtgatgagttactcggc
ttgaaagaaaatgttatcattggtaaacttgttccagctggtacaggtatgcaacgttat
cgtcaagcagagccttatacaaaagaggcagttgaagaaacaatcacggttgaataa
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integrated database retrieval system
