Cytobacillus kochii: CKF48_19970
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Entry
CKF48_19970 CDS
T05194
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bko
Cytobacillus kochii
Pathway
bko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKF48_19970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bko03019
]
CKF48_19970
03009 Ribosome biogenesis [BR:
bko03009
]
CKF48_19970
Enzymes [BR:
bko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKF48_19970
Messenger RNA biogenesis [BR:
bko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKF48_19970
Ribosome biogenesis [BR:
bko03009
]
Prokaryotic type
rRNA helicases
CKF48_19970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
DUF4422
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASV69389
UniProt:
A0A248TMP8
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All DBs
Position
3918773..3920236
Genome browser
AA seq
487 aa
AA seq
DB search
MVKFSDFGLSTELEKALSNMGFEEPTPIQAQSLPIALAGADMIGQAQTGTGKTTAFGVPM
LEKVTKEDGIQGLVLAPTRELAVQVAEELNRIGQVKGIRTLPIYGGQDIGRQIRALKNRP
QIIAATPGRLIDHIERRTIRLNNIKSVVLDEADEMLNMGFIEDIERILGEIEHERQTLLF
SATMPRRIQTLAEKFMNDPQIVRVKAKELTVKNIEQSYIEVHEKQKFDVLCSLLDIQSPE
LAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKDQTIDIMVATDVAA
RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGNKGLAVTFVSPREIDHLKIIENVTKT
KMKKEPVPTFKDVVAGNQRVTINRLMNTIDKNDYDEYKRIAESLLEDTDSVTVLAAALKL
LTKDPDVTPVKITAVEPLRSKKPKNRDGRNRSRFGDRPRSGGRDRKGGGRDYKGRERRRV
KNNKGRD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaattttcggattttggtttaagtacagagctagaaaaagctctttctaatatg
ggttttgaagagccaacacctattcaagcacaatcactaccaatcgcattagctggtgcg
gatatgattggtcaagcccaaacaggtactggtaaaacaacggcatttggtgtcccaatg
ttagagaaagtaacgaaagaagatggcattcaaggtttggttcttgctccaacaagggaa
ctagctgtgcaagtggctgaagaattaaatcgtattggacaagtgaaaggaatcagaact
ttaccgatatatggtggtcaagatattggtagacaaattcgcgcacttaaaaatcgtccg
caaataatcgctgccacaccaggccgtctaattgatcatattgaaagaagaacgattcgt
ctaaacaatattaaatcagttgttctagatgaagcggatgaaatgctaaatatgggcttc
attgaagatattgaaagaattcttggtgaaattgagcatgaacgtcaaacgcttcttttc
tcagcaacaatgcctagacgtattcaaactctagctgagaagtttatgaatgacccacaa
attgttcgtgtaaaagcaaaagagttaacagtaaaaaatattgaacaatcttatatcgaa
gtgcatgaaaaacaaaaatttgatgtattatgcagcttattggatattcaatctcctgaa
cttgcgattgtatttggtagaacgaaaaaacgcgtagatgaagtggtagaaggattaatt
aaacgtggatattctgcagaaggtattcatggtgatattccacaagcgaaacgtgatcaa
gttattcgtcgttttaaagatcaaacaatcgatattatggtagcaacagatgttgccgca
cgtggactagatatttcaggcgtttcacatgtctataactttgatattcctcaagatcct
gaaagctatgtgcaccgtattggacgtactgggagagctgggaataaaggtttagctgtt
acatttgtttctccacgagaaatcgatcacttgaaaattattgaaaatgtaacaaagaca
aaaatgaaaaaagaaccagtgccaacgtttaaagatgttgtggcaggtaaccaacgtgtg
acaattaatcgtttaatgaatacgattgataagaatgactacgatgagtataagcgtatt
gcagaatcattgttagaagatacagattcagtgacagtattggcagcagcattaaaatta
ttaacaaaagatccagatgtcacacctgtaaaaattacagctgtagagccacttcgttcg
aaaaaacctaaaaatagagatggacgtaaccgcagtcgctttggtgatcgtccgagatct
ggtggaagagatcgtaaagggggcggacgtgactataaaggtcgcgaaagacgtcgtgta
aaaaataataagggccgcgattga
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