Brevibacterium koreense: AAFP32_05225
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Entry
AAFP32_05225 CDS
T10975
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bkr Brevibacterium koreense
Pathway
bkr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAFP32_05225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bkr03400
]
AAFP32_05225 (mfd)
Enzymes [BR:
bkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAFP32_05225 (mfd)
DNA repair and recombination proteins [BR:
bkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAFP32_05225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
XBV90129
UniProt:
A0AAU7UNS9
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All DBs
Position
1133753..1137346
Genome browser
AA seq
1197 aa
AA seq
DB search
MVLNGLDLTRQNSTITDLVSAFNDQETAGGTIDAIRGLWPSILRRTLVSADSDPSTSAPQ
LIVTATTREAEDLARSLADWVAEDSIAIFPSWETLPHEKLSPRSDTVGARLQILHRLAHP
SPDRPLTFIIAPVRAFLQPLVKGLGDIEPVELAVGDEYEIDQLSHRLTELAYSRVDMVSR
RGEFAVRGGIVDIFPPTEDHALRIEFFGDEIDEIREFSVSDQRSIRAEADAVPLKLSAPP
CRELLLTDSIRERAAALSQTLPAASDMLDKIAGGVAVEGMESLSAVLADGMEPIIALLPE
STKIIITEPERVQARAADLVVTTNEFLEAAWSGAAAGGESPIDLSAATFRTMEEMEAGAR
LIGLAWWELGGFATDEELVSPAENLFSVPARAPRGYAGDVEAILTDVKGLIHNRWRILVL
TEGQGPGQRMVEVFSEAGVPATFVDDPTDIAEALVTVTTAAPFGGFVFDDLKLAVLTEAE
VLGRAAATSTRDMRRLPTRRKRNQVDPLNLAPGDYVVHDQHGVGKFVEMTQRTTGKGPNK
HTREYLIVEYAPAKRGQPGDRLYVPSDALDQVSRYVGGESPSLNKMGGADWSTTKAKARK
AVKEIAGELVRLYSARQATVGHTYGPDTPWQRELEDAFHYVETADQLTTIDEVKGDMEKA
VPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHFETFAERYSGFPVT
VGALSRFQTKKESDKVVEDLAAGKLDLVIGTHRLLSGEVRFKSLGLVIIDEEQRFGVEHK
ETLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGKKEDKQIK
AAIRRELMREGQVFYIHNRVKDIESVAGHIAELVPEARIAIAHGKMNEQRLEQVIVDFWE
KKFDVLVCTTIVETGIDISNANTLIIDHADRFGLSQLHQLRGRVGRGRERAYAYFLYPAD
TQLTETAHDRLTTLAAHTELGAGMQVAMKDLEIRGAGNLLGGQQSGQIEGVGFDLYVRLV
GEAVANFRGEDTEPEADMRIELPVDAHLPAEYVAHERLRLEAYRKLAAAANENQLQEVLD
ELVDRYGPYPEAVGVLADVARLRIRAKASGINDIVVQGNFVRFGPLELEDSQVVRLKRLY
PKSLLKPAIRSVLVPKPMSGSGFDAKEMTDSDILRWAHQFLDAIVPVIVSEVVEAGV
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcaacggactcgatctcacacgccagaactccaccatcactgacctcgtctca
gcgttcaacgaccaggagacagcaggtggaacgattgatgcgatcagaggtctgtggcca
tcgatcctgcgccgaacgctggtgtcggctgatagtgatccgtccacctcggcgccgcag
ctcatcgtcacggccaccacgcgtgaagcggaagacctggcccggtcgctggcggactgg
gttgccgaggattcgatcgcgatcttccccagctgggagaccctcccacacgaaaagctc
tcacctcggtctgacaccgtcggagcgcgtctgcagattctgcaccgcctggcccacccg
agcccggacaggcctctgaccttcatcatcgcccccgtgcgcgctttcctgcagccgttg
gtcaaggggctcggcgacatcgagccggtggaattggccgtcggcgacgaatacgagatc
gaccagctttcccaccgcctcaccgaacttgcttactcacgcgtggacatggtctcccgc
cgaggagagttcgcggttcgcggcggcatcgtcgacatcttcccgccgaccgaggatcat
gccctgcgcatcgagttcttcggtgacgagatcgacgagatccgcgagttctccgtcagc
gaccagagatccatccgcgccgaggcggacgctgtgccactgaagctgtcggctccaccc
tgccgggaactcctgctcaccgactccatccgggagcgtgcggccgcactgtcacagacg
ctgccggcagcatcggacatgctcgacaagatcgccggaggtgtcgccgtcgaaggcatg
gaatcactgtcggcggtgctggccgatggcatggagccgatcatcgctctgctgcccgaa
tccacgaagatcatcatcaccgaacccgaacgggtgcaggccagggccgccgacctcgtc
gtgacgacgaacgaattcctcgaagcagcatggtcaggggccgcagccggcggcgaatcc
ccgatcgatctgtctgctgcgacgttccggacaatggaagagatggaagccggcgctcgc
ctcatcggcttggcctggtgggagctcggcggattcgccaccgacgaagaactcgtctca
cccgcggagaatctgttctccgttccggctcgcgcgcctcgaggatatgccggtgacgtc
gaggcgattctcaccgacgtcaagggactcatccacaacaggtggcgcatcctcgtgctc
actgaaggacaggggccgggccagcgcatggtcgaggtgttctcggaggctggcgtgccg
gcgacattcgtcgatgacccgacagacattgcagaagctctggtgaccgtgaccacggcc
gcgcccttcggcggattcgtcttcgatgacctcaaactggctgtgctcacagaagccgaa
gtgctcggtcgcgccgcagccacctcgacgagggacatgcgtcgcctgcccacccgacga
aaacgcaatcaggtggacccgctcaacctggcacccggggactacgtcgtccacgaccag
cacggtgtcggcaagttcgttgagatgacgcagcgaacgaccggcaagggcccgaacaag
cacacccgcgaatacctcatcgtcgaatacgccccagccaaacgcggtcagcccggcgac
cgcctgtatgtgcccagcgacgcgctcgaccaggtcagtcgctacgtcggcggggagagc
ccgagcctgaacaagatgggcggcgccgactggtcgacgacaaaggccaaggccaggaaa
gcggtcaaggagatcgcgggagaactcgttcgcctctactccgcgcgtcaggccaccgtc
ggtcacacctacgggcccgataccccgtggcagcgtgaattggaggatgccttccactac
gtggagacagccgaccagctgacgaccatcgacgaggtcaagggggatatggagaaggcg
gtgccgatggatcgtctgatctgcggcgatgtcggctacggtaagaccgagatcgcggtt
cgagccgcgttcaaggcgatccaggacggtaagcaggttgctgtgctcgtccctacgaca
ctgcttgtccagcagcacttcgagaccttcgccgaacgctactcggggttccccgtcacc
gtcggtgcgctctcgcgcttccagactaagaaggagtcggacaaagtcgtcgaggatctg
gccgcgggcaaactcgatctggtcatcggcacgcaccgcctgctcagcggcgaggtgaga
ttcaagagcctgggactggtcatcatcgacgaggagcagcgcttcggcgtcgagcacaag
gagacgctcaaggcgatgcgcacgaacgtcgacgtgctcgcgatgtccgcgactccgatc
ccgcggaccctggagatggcagtgaccggcatccgcgagatgtcgaccctagccaccccg
cccgaggaacgccatccggtgctgacctatgtgggcaagaaagaggacaaacagatcaag
gccgcgatccgtcgtgaactgatgcgcgagggccaggtcttctatatccacaaccgcgtc
aaggacatcgaatccgtggccggtcacatcgccgaactcgtccccgaggcccggatcgcg
attgcccacggaaagatgaacgaacagcgactggagcaggtcatcgtcgacttctgggag
aagaagttcgacgtgctcgtgtgcacgaccatcgtcgagaccggcatcgacatctccaac
gccaacacactcatcatcgaccatgctgatcggttcgggctgtcccagctgcaccagctg
cggggtcgagtcggacgcggcagagaacgtgcctacgcctacttcctctacccggctgac
acccagctcacggagactgcccacgatcggctgacgacgctggccgcccacaccgaactc
ggcgctggcatgcaggtggccatgaaagacctcgagatccgcggcgccggcaacctcctc
ggcggacagcagtccgggcagatcgaaggggtcggattcgacctctacgtgcgcctcgtg
ggagaggccgttgcgaacttccgtggcgaggacacggaacccgaggccgacatgcggatc
gaacttcctgtcgacgcgcacctgccggccgaatacgttgcccacgaacgtctgcgactc
gaggcctatcggaaactcgcggcagcggccaacgagaaccagctgcaggaagtcctcgac
gaactcgtcgatcggtatggtccctacccagaagccgtgggagtgctcgccgatgtcgcc
cggctgcggatcagagccaaagcctcgggcatcaacgacatcgtcgtccaaggcaacttc
gtccgcttcggcccgctcgagctcgaggattcgcaggtcgtgcgcctcaaacgcctgtac
ccgaagtcgctgctcaagccggcgatccggtcggtgctcgtgcccaagccgatgtccgga
agcggcttcgatgcgaaggagatgacggattccgacatcctgcgttgggcccaccagttc
ctcgacgcgatcgtccccgtcatcgtctccgaggtcgtcgaggctggagtctga
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