Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0005
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Entry
BBKW_0005 CDS
T04223
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bks03032
]
BBKW_0005
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_0005
Enzymes [BR:
bks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BBKW_0005
DNA replication proteins [BR:
bks03032
]
Prokaryotic type
DNA Topoisomerases
BBKW_0005
DNA repair and recombination proteins [BR:
bks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBKW_0005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BAQ28140
LinkDB
All DBs
Position
5305..7401
Genome browser
AA seq
698 aa
AA seq
DB search
MADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPGM
YIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVPGE
GVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYI
NQKPTTRLLKGEPMGEDESTGTSVTFWADGAIFETTTYDFEILRNRFQQMAFLNKGLKLS
LTDLREPDQAGDEVAGNGDDNAEKHQTVTYQYNDGIKDYVDYLVKSRKATPVEPDVIDFE
AEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAREKNI
LKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD
SHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI
VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYGEDF
DLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGT
HDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQ
IEDAAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaccttgatgcggattcgctgaacgaatcagctgaaaacacgcaggaagatcag
atccaaaacgatcagctcgaagatgcgcagctcgacgacaccttggctccggagcattac
gacgcgtccgatctgagagtgttggaaggcctcgaagcggtgcgaatccgcccaggcatg
tacatcggctccaccggcccccgtggcctgcaccacctggtgtatgagatcgtcgacaac
tccgtcgacgaagcgctggcgggctatgcctcgcatatcgaagtgacgattctgccggac
ggcggcgtgcgcgtggtcgatgatggccgaggcattccggttgacgaagttccgggcgaa
ggtgtttccggtgtggaaactgtgatgaccaagctgcacgcaggcggcaagttcggtggc
ggcggctacgcggtctccggcggtttgcacggcgtgggtatttctgtggtgaacgcattg
tcgacccgcgtcgacatcgaagtgcgccgtcagggtttccattggacccagacctacatc
aaccagaagccgaccacgcgtctgctcaagggcgaaccgatgggcgaagacgagtccacc
ggcacttccgtgaccttctgggccgacggcgcgatctttgaaaccaccacctacgatttc
gagattctgcgtaaccgtttccagcagatggcattcctgaacaagggactgaagctgtcc
ctaactgatctgcgcgagccggaccaggcaggagacgaagttgcaggcaacggtgacgac
aatgccgagaagcatcagacagtcacctaccagtacaacgacggcatcaaggattacgtc
gattacttggtgaagtcccgcaaggcaaccccggtcgaaccggatgtcatcgatttcgaa
gcggaagatctgaaaatcggcatttccgcggaaatcgccatgcagtggaccactgcatac
tccgaagcggtgcacaccttcgccaacaccatctccaccaccgaaggcggcacccacgaa
gaaggcttccgtgcggctctgacttcgctcgtcaatcgttacgcacgcgagaagaacatc
ctcaaagacaaggacgagaacctctccggcgacgatgtgcgcgaaggtctgaccgcagtg
gtttcggtgaagctcaccaccccgcagttcgaaggccagaccaagaccaagctcggcaat
tccgaagcgaaaaccttcgtgcagcgcgtgatgactgacaagctcggcgactggttcgat
tcgcatcctagcgaagccaagaacatcatccagaaggccattgaagcctcccgtgcgcgt
cttgcagccaagaaggcacgtgagaacacccgccgcaagtcaatcttcgaatccgcgggc
atgccagacaaactgaaggattgccagtccaacaatcctgaagaatgcgaactgttcatc
gtggagggtgactccgcaggcggctccgcaattcagggacgcaacccgatcacgcaggcc
attctgccgctgcgaggcaaaatcctcaacaccgagcgtgcaagccttgaccgcatgatg
aagtccgaaaccatcgaatcgctgatcaccgcggtcggcggcggttacggcgaggatttc
gacctgaacaaagtccgctaccacaaggtcatcattatggccgatgccgatgtggacggc
gcgcatatcgcaaccctgaatctgacgctgttcttccgctacatgcgcccgatgatcacc
gctggttacgtgtatgtggccatgccgccgctgtaccgactcaagtggaccaaaggcacg
cacgacttcgtgtacaccgacgccgaacgtgaccgcgtgctcgccgaaggcaaggccgcc
ggccgtcagttgccgaagggcgaaggcatccagcgttacaagggtctgggtgaaatgagc
taccaggaactgtgggaaaccaccatggatcctgaccaccgcattctgaagcaggtgcag
atcgaagacgcggccgcagccgacgaaaccttctccatgctcatgggcgacgaagtcgaa
cctcgccgtctgttcatccagcgcaacgcacgcaacgtcagctggatcgacgcgtaa
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