Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0164
Help
Entry
BBKW_0164 CDS
T04223
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bks03032
]
BBKW_0164
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_0164
Enzymes [BR:
bks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BBKW_0164
DNA replication proteins [BR:
bks03032
]
Prokaryotic type
DNA Topoisomerases
BBKW_0164
DNA repair and recombination proteins [BR:
bks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBKW_0164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
DUF6429
Motif
Other DBs
NCBI-ProteinID:
BAQ28299
LinkDB
All DBs
Position
222299..225379
Genome browser
AA seq
1026 aa
AA seq
DB search
MATGSKLVIVESPTKAKKIGGYLGSEYTVMASVGHIRDLAQPSQVPAADKIKFGKFGVDV
EDGFKPYYIVDGNKKKTVSELKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKEAIKASLDNTRDVDDDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVTATLEAPDADGNNVAFESRMVSLGGRRLAGSKDF
GADGKLTAAGAKDQVVQLDEAQASAIAQALEFATFTVASMETKPYRRRPVPPFTTSTLQQ
TAGNRLGMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAAREAVVKHFGENYLSDA
PKQYATKTAGAQEAHECIRPAGAKFRDPAEIASKVPADQLKLYTLIWQRTLACQMADATG
STATVRLSAPTESNGEAMFQASGTVIEFPGFMKATGEGRRASAESKKGDAAGSVEQAAQS
GKSSKADKKSDDNVSLPPMNPGDALAAVAVGADGHETQPPARYTEASLVKTLEQKEIGRP
STYASIISTIIDRGYVYERGRALIPSWLAFSVVKLLETKFPRYVDYEFTADMESGLDQIA
SGQETGRNWLTRFYFGSGEGAAQSADEAHAGLQQQVAQLGEIDAREINTIEIGDGLHVRV
GRYGPYLEDMNHLDDEGNPKRASLPDTLAPDELTVEVGHDLIENHSGGPRALGVDPVSGG
TVEVRNGRFGPYVALVMPSADAGDAGDAAGGASEKPKRGKGAKKAAADRPKMASLFKTMS
PESLTLDDALRLLSLPREVGSYEEVDAQTGEVQTVTVQANNGRYGPYLTKTGADGKSDTR
SLASEDEIFTVDVDKAKELFAQPKYGRGRGRGAAKPPLRELGVDPETQKQVTIKEGFYGA
YITDGETNRTLPKQYAPESIEPAEAFRLLAEKRAQGPSKRRGRKTAAGKGGAKKAGAAKA
SKTSKAASVDKARADRRAKVRELADKGWANTRIAKEIGSTPTTVKADVEWLAANEGYTRP
AVVPAR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctaccggcagcaagctcgtgattgtggagtctcccaccaaggccaagaaaatcggt
gggtatttgggctccgaatatacggtgatggcctcggtcggccatattcgagatcttgcg
cagccgagccaggtgccggccgccgacaaaatcaaattcggcaagttcggcgttgacgtg
gaagacggattcaagccgtactacatcgtcgacggcaacaagaagaaaaccgtgtccgag
ctgaaaagcgcgttgaaaaaagccgacaccctgtacctcgcaaccgatgaggatcgcgag
ggagaggccatcgcctggcatctggtacagacgctcaagccgaaagtgccggttaagcgc
atggtgttccacgaaatcacgaaggaagccatcaaagcgtcgcttgacaatactcgcgac
gttgacgacgacatggtcgacgcccaggaaacccgccgtattctggaccgcctgtacggc
tatgagctttctccggtgctgtggcgcaaggttgggccgggtctttccgcgggccgtgtg
cagtccgtcgccacgcgtttgatcgtggagcgcgagcgcgagcgtatggcgttcgtgcgt
gccccgtattgggatgtcaccgcaacgttggaggcgccggatgccgatggcaataatgtt
gcgttcgagtctcgtatggtgtcgttgggtggccgtcgtttagctggttccaaggatttc
ggcgccgatggcaagctgactgcggccggtgcgaaggatcaggtcgtgcagttggacgag
gcgcaggcttccgcgattgcgcaggcattggaatttgcaacgtttactgtcgcgtcgatg
gaaaccaagccgtaccgtcgccgtccggttccaccgtttaccacgtccaccttgcagcag
accgccggcaatcgtctcggcatgagctcgcgtcagaccatgcgtgctgcgcaaggattg
tacgaaaacggctatatcacctacatgcgtaccgattcggtgacgctgtcgcaggaagcg
atcgcagccgcacgcgaagcggtcgtcaagcatttcggcgaaaactatctgtcggacgcg
ccgaaacaatatgccacaaaaaccgcgggcgcgcaggaagcccacgaatgcatcaggccg
gcgggtgcgaaattccgcgatcctgcggaaatcgcaagcaaagtgccggccgaccagctc
aagctgtacacgctgatctggcagcgcacgcttgcctgccagatggcagacgcaaccggt
tccacggcgaccgtgcgactgtctgcaccgaccgaatcgaatggggaagccatgttccag
gcttccggcactgtcatcgaattccccggctttatgaaggcgaccggtgaaggccgccgc
gcatccgccgaatcgaagaagggcgatgctgctggaagcgttgaacaggctgcgcaatcc
ggtaaatccagcaaagcggataagaagtcggatgacaatgtgtcgcttccgccgatgaat
ccgggcgatgcgctcgccgcggtggcggttggtgccgacggacacgaaactcagcctccg
gcgcgttacaccgaagcgtcgctcgtgaaaacgttggaacagaaggaaatcggccgcccg
tccacgtatgcgagcattatttccacgatcatcgatcgcgggtacgtgtatgagcgcggt
cgtgcgttgattccgtcgtggctcgcgttctccgtggtcaaattgctggaaacgaagttc
ccgcggtatgtggattacgagttcactgccgatatggaaagcggtcttgaccagatcgcg
agcggtcaggagaccggcaggaattggctgacccgcttctatttcggttccggtgagggt
gccgcgcagtctgcggacgaggcgcatgccggtttgcagcagcaggtcgcgcagttgggt
gaaatcgacgctcgcgagatcaatacgattgagattggcgacggtttgcatgtgcgcgtc
ggtcgatatggcccgtatttggaggatatgaaccatctggatgatgagggcaatccgaag
cgtgcctcgctgccggatacgcttgctccggatgagctgacggtggaagtcggtcatgat
ttgatcgagaaccattccggcggtccgcgcgctcttggcgtcgatccggtttccggaggc
accgttgaagtgcgtaatggtcgtttcgggccgtatgttgcgctggtgatgccttctgcc
gatgccggcgatgctggtgatgctgccggtggcgctagtgagaagccgaagcgcggcaag
ggtgcgaagaaagccgctgccgatcgcccgaagatggcgtcgttgttcaaaacgatgagt
ccggaatcgttgacgttggatgatgcgttgcgtctgctgagcttgccgcgtgaagtcggt
tcgtatgaagaggtggatgcgcagaccggtgaagtgcagacggttaccgtgcaggccaat
aatggtcgttacggtccgtatttgacgaaaaccggtgccgatggcaagtcggatacgcgt
tcgcttgcttcggaagatgagattttcacggttgatgtggataaggcgaaggaactgttc
gcccagccgaagtatggccgtgggcgtggccgtggtgctgcgaagccgccgctgcgcgaa
ttgggcgtcgatccggaaacgcagaagcaggtgaccatcaaggaaggcttctacggcgcg
tatatcaccgatggtgagacgaatcgtacgttgccgaagcagtatgctcctgagtcgatc
gaaccggccgaggcgttccgtttgctggctgagaagcgtgcgcagggcccgtcgaaaagg
cgtggacgtaagaccgccgccggcaagggcggggctaagaaggctggtgctgccaaggct
tctaagacttccaaggcggcttccgtcgataaggctcgtgccgatcgccgtgccaaggtg
cgcgagttggccgataagggttgggccaacacccgtatcgccaaggagatcggttccacg
ccgaccacggtgaaggccgatgtggaatggcttgccgccaacgaaggctacacccgtccc
gccgtagttcccgcccggtga
DBGET
integrated database retrieval system
