Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0279
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Entry
BBKW_0279 CDS
T04223
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Pathway
bks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBKW_0279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bks03019
]
BBKW_0279
03016 Transfer RNA biogenesis [BR:
bks03016
]
BBKW_0279
Enzymes [BR:
bks01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBKW_0279
Messenger RNA biogenesis [BR:
bks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBKW_0279
Transfer RNA biogenesis [BR:
bks03016
]
Prokaryotic type
tRNA degradation factors
BBKW_0279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
KH_5
S1_2
Motif
Other DBs
NCBI-ProteinID:
BAQ28414
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Position
358251..360914
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AA seq
887 aa
AA seq
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MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQAELKNIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAGEFTDMDDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVIDECIDGPAEMSPYAPRIITTTVPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQESSAPRRERFDRDDRRGSRGRRDDRRSDRDDRDYDDRPRRRRSDR
DDDRDYDDRPRRRRSDRDDRDYDRDDRRSDRDDRDYDDRPRRRRSDRDDRDYDRDDRRSD
RRRSSRRDDRNPRYAADENYDEYRADREERSERPRRRVRRDFDPFED
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgttgaagccgtaatcgataatggttcgtttggtaag
cgcacgttgcgcttcgagactggtcgtctcgcccagcaggcggatggtgccgtcgccgcc
tatcttgacgatgattcgatgattctgtcgaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtggacgtggaagagaagatgtacgccgccggcaag
atcccgggatcgttcttccgccgtgaaggccgcccgagctccgaggctattctcgcttgc
cgcattattgaccgcccgctgcgcccgttgttcccgcacacgctgcgcaacgaagtgcag
gttgtggaaaccgtgctcgccgtcaacccggatgatgcttacgatgttatcgctctgaac
gctgcttccgcttccaccatgatttccggtctgccgttcgaaggcccggtttccggcgtt
cgcttggctctgatcgacggccagtgggtcgctttcccgcgttggagcgagcgtgagcgc
gccgtgttcgaaatcgtggttgccggccgcgtggtggagaacggcgatgtcgccatcgct
atgatcgaagccggcgcaggcaagaacgcctggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgttgccggtggtcttgaagcagctaagccgttcatcaaggtg
atctgcgaggctcaggccgaactcaagaacatcgctgcgaaggaaaccaaggaattccag
ctcttcccggagtacaccgaagatctgtacaaccgtatcgatgagatcgctcacgctgat
ctcgacgaggctctctccattgccgagaagctgccgcgccaggatcgcattcatgagatc
aaggaaggcgtcaaggccactctcgccggtgaattcaccgacatggacgatgccgaaaag
gaaaaggagatcggcaatgcgttcaaggagctgcagcgccagatcgtgcgtcgccgcatc
ctgacccaggattatcgcatcgatggccgtggcctgcgcgacatccgcactctgtccgct
gaggtagacatcgttccgcgcgtgcacggttccgcactgttccagcgtggcgaaacccag
attctgggcgttaccaccctgaacatgctcaagatggaacagcagatcgacgcactgtcc
ggtccgcagtccaagcgctacatgcacaactatgagatgccgccgtactccaccggtgaa
accggccgcgtcggctccccgaagcgccgcgaaatcggtcacggtgctctggcggagaag
gctctcgtgccggtgctgccgaaccgcgaggagttcccgtatgccatccgtcaggtctcc
gaagccattggctccaacggttccacctccatgggctccgtgtgcgcatccaccctgtcg
ctgctcgccgcaggcgtgccgctgaaggctccggttgccggcatcgccatgggcctcgtg
tccggtgatgttgacggccagcacatcttcaagaccctgaccgatattctcggtgctgaa
gacgcattcggcgatatggacttcaaggtcgcaggcacctccgagttcatcaccgccctg
cagctcgacaccaagctcgacggcattccggcagacattcttgcctccgctctgcagcag
gccaaggaagcccgcaccaccattctcgaagtcatcgacgagtgcatcgatggcccggcc
gagatgagcccgtatgctccgcgcatcatcaccaccaccgttccggtcgacaagatcggt
gaggtcatcggcccgaagggcaagatgatcaaccagatccaggaagagaccggtgcggag
atcgccatcgaagatgacggtaccgtattcatctcctccgagggtggcgacggcgctgaa
aaggctaagcagatcatcgaacagatcgctaacccgcacgttcctgaagccggcgaaacc
tacaacggcaaggttgtgaagactacctccttcggtgccttcgtgaacctgaccccgggc
actgacggtctgctgcacatctcccagatccgtaatctggccaacggcgagcgtatcgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtagtcgtgcagggcgttgac
gatcgcggcaagatctccttggccattccgggcttcgaagatcaggaatcctccgctccg
cgtcgcgagcgtttcgatcgcgatgaccgtcgcggcagccgtggccgtcgtgatgatcgt
cgttccgatcgtgacgatcgtgattatgatgatcgtccgcgtcgtcgtcgttctgatcgt
gacgatgaccgcgactatgatgatcgtccgcgtcgtcgtcgttccgatcgtgacgaccgt
gattacgatcgtgatgatcgtcgttccgatcgtgacgatcgtgattatgatgatcgtccg
cgtcgtcgtcgttccgatcgtgacgaccgtgattacgatcgtgatgatcgtcgttccgac
cgtcgccgcagcagccgccgcgacgaccgcaacccgcgttacgcagccgacgagaactac
gacgagtaccgtgccgatcgcgaagagcgttccgagcgtcctcgccgccgcgtccgccgc
gactttgatccttttgaggactga
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