Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0629
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Entry
BBKW_0629 CDS
T04223
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Pathway
bks03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBKW_0629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_0629
Enzymes [BR:
bks01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
BBKW_0629
DNA repair and recombination proteins [BR:
bks03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BBKW_0629
Prokaryotic type
BBKW_0629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF6139
Motif
Other DBs
NCBI-ProteinID:
BAQ28764
LinkDB
All DBs
Position
complement(743513..744223)
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AA seq
236 aa
AA seq
DB search
MTQAHIKPLKDLVEPGWANALAEVEPQVHHMGDFLRGEIAAGRRYLPASANILRAFTIPF
DSIKVLIVGQDPYPTPGHPVGLSFCVAPEVKPIPRSLTNIYKELTDDLGIPMPANGDLTP
WTSQGVMLLNRCLTVEAGKPGSHQDKGWEIVTDAAIRALNNRRNPDGSAKPLVAILWGRK
AQTLEPLLTNAFIISSPHPSPMSARYGFFGSKPFSRANQALIAAGEKPVNWSLPSA
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagcgcacatcaaaccattgaaagacctcgtggagcccggatgggcgaacgcc
ctcgccgaagtcgagccacaggtgcaccacatgggcgattttctccgaggggagatcgca
gccggacgccgatatcttccggccagcgcgaatattctacgcgcgttcaccattccgttc
gacagcatcaaggtgcttatcgtgggacaggacccttaccccactcccgggcacccggtg
ggactgagcttctgcgtggcaccggaagtcaagccgatacctcgcagcctgaccaacata
tacaaggaactgacggatgatctcggcatccctatgcccgcgaacggcgatctgacgcct
tggacgagccagggcgtcatgctgctgaacaggtgtctgaccgtcgaagcgggcaagccc
ggcagccaccaagacaaaggatgggagatcgtcactgacgctgcgatcagggcgctcaac
aaccgccgtaatcccgacggcagcgccaagcctttggtcgccattctgtggggacgcaag
gcgcaaacgttggagccgctgctcaccaatgcgttcatcatctcgtcgccccacccaagc
cccatgtcagcacgatatggattcttcggatccaagccgttctcacgcgccaatcaagcg
ctcatcgccgcaggtgaaaagcctgtgaattggtcccttccgtcagcttaa
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