Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0930
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Entry
BBKW_0930 CDS
T04223
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
bks
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Pathway
bks03030
DNA replication
bks03430
Mismatch repair
bks03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBKW_0930
03430 Mismatch repair
BBKW_0930
03440 Homologous recombination
BBKW_0930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bks03032
]
BBKW_0930
03400 DNA repair and recombination proteins [BR:
bks03400
]
BBKW_0930
Enzymes [BR:
bks01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBKW_0930
DNA replication proteins [BR:
bks03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBKW_0930
DNA repair and recombination proteins [BR:
bks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBKW_0930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
HrpA_pilin
Motif
Other DBs
NCBI-ProteinID:
BAQ29065
LinkDB
All DBs
Position
1112515..1113489
Genome browser
AA seq
324 aa
AA seq
DB search
MPKPSAATFHLIYGGDPYLNEQTVRDLRHQAQCKHPDAETIELDATNADHYAFDEAVSPS
LLSERSIVIVSNLQNADDRLGETMVAYCKQAVNNPTEASIVICQHEGGVKGKRLIDQLTK
AGAVKEAVADLKKADAKLNFTIQCFERRNRRIEPMAAQQLVAVLGDKTGELAAMAGQLCF
DFDDNPITLQRVNQYLTANPQVDGFRVADLALSGRSADAIIAMRASVEQGTAPIALIGAL
AMKLRTMAKASAVRSGTISEAEAKTNSWVLKNATRQLSGWTSDGMRRCIQMLAWADEQSK
TNGSDPVYALERSIELISNKGRTN
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaccatccgcagcaaccttccacctcatctatggaggcgacccgtacctcaac
gagcaaaccgtacgcgacctgcgccaccaagcgcaatgcaaacaccccgacgcggaaacc
atcgaactcgacgcaaccaacgccgatcattacgccttcgacgaagcggtaagcccatca
ctcctatccgaacgatcaatcgtcatcgtatccaacctgcaaaacgccgacgacagactc
ggcgaaaccatggttgcctactgcaagcaagccgtcaacaatccaaccgaagccagcatc
gtcatctgccaacatgaaggcggcgtcaaaggcaaacgactcatcgaccaactcaccaaa
gccggagcagtcaaagaagctgtggccgacctcaaaaaagccgacgcaaaactcaacttc
accatacaatgcttcgaacgacgcaaccgacgcatcgaacccatggccgcgcagcaactc
gtagccgtactcggcgacaaaaccggcgaactcgcagccatggcaggccaactctgcttc
gacttcgacgacaatcccataacattgcaacgcgtcaaccaatacctcaccgccaacccc
caagtagacggcttccgcgtggccgacctcgcactctccggacgctcagccgacgccatc
atcgccatgcgcgcctcggtcgaacaaggcaccgcgccaatcgcactcatcggagcgctc
gccatgaaactacgcaccatggccaaagcctcagccgtacgctccggcaccatcagcgaa
gcggaagcgaaaaccaattcatgggtactgaaaaacgccaccagacagctctccggatgg
acctccgacggcatgagacgatgcatccaaatgctcgcatgggccgacgaacaaagcaaa
accaacggatcggaccctgtctacgcgctggaacgatccatcgaactaatcagcaacaaa
ggacgaaccaactaa
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